Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01412 ATGGACAGGCTCATAAGGCTAGACCCATCAAACACAGTCCTAATCAGGGTCGAGCCAGGGCAGAAGTGCCATGGCAGGATCACCTTACACAACGTCATGTACACAATGCCAGTGGCCTTCAGGCTCCAACCCCTCGTCAAAACCCGCTACACCGTGAAGCCCCAATCAGGGATCATATCCCCCTTGGCCACACTCACCATAGAAATCACCTACCATATTCTCCCACAACAAGGCTCCAATGTTAATAACACTCTCCCCCACTGCCTTCCCTCACTCAAACGACTCTTTCCTCCTCCACAGTGTCCTCGCTCCCGGCGCCGCCATCAAGGAACCCTCCTCCATGTTCGACGCCGTCCCCAGCGACTGGTTCAAAAAGAAACAAGTCTTCACCGACAGCGCCATCAGGACCCACAAGGCCAAACGTTGCTCCACTTGGCAATTTCGCAAGGGAGACCCGATCTCGTTCAGTTGCTGCTAGAATTTGAGCCTGACATTGAGGCCCCGAACCGTTCTGGCTCAACCCCACTTGAAGCTGCATCTTCCTCCAACGAAGCCTTGATTGTTGAGCTTCTTTTGGCACACAAAGCCTAA 591 0.5347 MDRLIRLDPSNTVLIRVEPGQKCHGRITLHNVMYTMPVAFRLQPLVKTRYTVKPQSGIISPLATLTIEITYHILPQQGSNVNNTLPHCLPSLKRLFPPPQCPRSRRRHQGTLLHVRRRPQRLVQKETSLHRQRHQDPQGQTLLHLAISQGRPDLVQLLLEFEPDIEAPNRSGSTPLEAASSSNEALIVELLLAHKA 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01412 196 ProSiteProfiles Ankyrin repeat profile. 138 170 IPR002110 GO:0005515
Pumo1g01412 196 ProSiteProfiles Ankyrin repeat region circular profile. 138 170 - -
Pumo1g01412 196 Gene3D - 117 196 IPR036770 -
Pumo1g01412 196 Gene3D Immunoglobulins 1 88 IPR013783 -
Pumo1g01412 196 Pfam Ankyrin repeats (many copies) 133 177 IPR002110 GO:0005515
Pumo1g01412 196 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 148 IPR000535 -
Pumo1g01412 196 ProSiteProfiles Ankyrin repeat region circular profile. 171 196 - -
Pumo1g01412 196 PANTHER MYOTROPHIN 107 196 - -
Pumo1g01412 196 SMART ANK_2a 138 167 IPR002110 GO:0005515
Pumo1g01412 196 SMART ANK_2a 171 196 IPR002110 GO:0005515
Pumo1g01412 196 SUPERFAMILY Ankyrin repeat 133 196 IPR036770 -
Pumo1g01412 196 SUPERFAMILY PapD-like 2 72 IPR008962 -
Pumo1g01412 196 Pfam MSP (Major sperm protein) domain 5 71 IPR000535 -
Pumo1g01412 196 ProSiteProfiles Ankyrin repeat profile. 171 196 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01412 Pumo-Chr1 23192203 23193051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01412 134 196 MAP Kinase Kinase Kinase AT3G58760 38.095 4.61e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01412 - - gmx:100782444 238.039