Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g01412 | ATGGACAGGCTCATAAGGCTAGACCCATCAAACACAGTCCTAATCAGGGTCGAGCCAGGGCAGAAGTGCCATGGCAGGATCACCTTACACAACGTCATGTACACAATGCCAGTGGCCTTCAGGCTCCAACCCCTCGTCAAAACCCGCTACACCGTGAAGCCCCAATCAGGGATCATATCCCCCTTGGCCACACTCACCATAGAAATCACCTACCATATTCTCCCACAACAAGGCTCCAATGTTAATAACACTCTCCCCCACTGCCTTCCCTCACTCAAACGACTCTTTCCTCCTCCACAGTGTCCTCGCTCCCGGCGCCGCCATCAAGGAACCCTCCTCCATGTTCGACGCCGTCCCCAGCGACTGGTTCAAAAAGAAACAAGTCTTCACCGACAGCGCCATCAGGACCCACAAGGCCAAACGTTGCTCCACTTGGCAATTTCGCAAGGGAGACCCGATCTCGTTCAGTTGCTGCTAGAATTTGAGCCTGACATTGAGGCCCCGAACCGTTCTGGCTCAACCCCACTTGAAGCTGCATCTTCCTCCAACGAAGCCTTGATTGTTGAGCTTCTTTTGGCACACAAAGCCTAA | 591 | 0.5347 | MDRLIRLDPSNTVLIRVEPGQKCHGRITLHNVMYTMPVAFRLQPLVKTRYTVKPQSGIISPLATLTIEITYHILPQQGSNVNNTLPHCLPSLKRLFPPPQCPRSRRRHQGTLLHVRRRPQRLVQKETSLHRQRHQDPQGQTLLHLAISQGRPDLVQLLLEFEPDIEAPNRSGSTPLEAASSSNEALIVELLLAHKA | 196 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g01412 | 196 | ProSiteProfiles | Ankyrin repeat profile. | 138 | 170 | IPR002110 | GO:0005515 | |
Pumo1g01412 | 196 | ProSiteProfiles | Ankyrin repeat region circular profile. | 138 | 170 | - | - | |
Pumo1g01412 | 196 | Gene3D | - | 117 | 196 | IPR036770 | - | |
Pumo1g01412 | 196 | Gene3D | Immunoglobulins | 1 | 88 | IPR013783 | - | |
Pumo1g01412 | 196 | Pfam | Ankyrin repeats (many copies) | 133 | 177 | IPR002110 | GO:0005515 | |
Pumo1g01412 | 196 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 4 | 148 | IPR000535 | - | |
Pumo1g01412 | 196 | ProSiteProfiles | Ankyrin repeat region circular profile. | 171 | 196 | - | - | |
Pumo1g01412 | 196 | PANTHER | MYOTROPHIN | 107 | 196 | - | - | |
Pumo1g01412 | 196 | SMART | ANK_2a | 138 | 167 | IPR002110 | GO:0005515 | |
Pumo1g01412 | 196 | SMART | ANK_2a | 171 | 196 | IPR002110 | GO:0005515 | |
Pumo1g01412 | 196 | SUPERFAMILY | Ankyrin repeat | 133 | 196 | IPR036770 | - | |
Pumo1g01412 | 196 | SUPERFAMILY | PapD-like | 2 | 72 | IPR008962 | - | |
Pumo1g01412 | 196 | Pfam | MSP (Major sperm protein) domain | 5 | 71 | IPR000535 | - | |
Pumo1g01412 | 196 | ProSiteProfiles | Ankyrin repeat profile. | 171 | 196 | IPR002110 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g01412 | Pumo-Chr1 | 23192203 | 23193051 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g01412 | 134 | 196 | MAP Kinase Kinase Kinase | AT3G58760 | 38.095 | 4.61e-07 | 47.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g01412 | - | - | gmx:100782444 | 238.039 |