Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01405 ATGGCGGAAGAAAGTGTTCCCACGAAGCGCTGCAACGCGAAAGAGCCTCTTCTGCTTCAATGCGCGGAGCTTGTGTTACCGTATCTAACCCCTTCGGAACTCGCCAACGTCTCTCTGACCTGCAAATCCCTCCACAAACTCTCCCACTCCATCACCCTGCGCCGCGCCTCCGACGCTTCCAGAACCTTCGAGACCCTTCCGATCCCCTTTCTCAACACCGCGGAGGATGCCCACCCCTACGCGCACTTCCTCTACACGCGCTTTCTCCTCCTACCATCCCCTTTCCTCCTCCCTCGCCAGCCCTGGGGCTCTTCTGTAATTTCCCCCTCCCCGCAGCGTCACCTTCGCGCGGAATCGGTGGGCCTGGTCGATGGATCGGGCCGGGCCGTGTCGGGCTGCGAGTGCGAGGATTGTCGGGGCTCCTCCGCGTGTCCCTGTGCGGCGGGCCTGGATGGGCTCGATGACGTGGGCCGAGAGTGCGGGCCGGGCTGCCGGTGCGGGCCCGAGTGCGGGAACCGGTTGGCCAGAAACGGGGTTGCGGTGAAGGTGAAGATTGTGAGAGACGGGAGGAAAGGGTGGGGGTTGCACGCAGACCAGTTCATTCCGAAAGGAGAGTTCGTATTTGAATATGCGGGTGAACTCTTGACAACCAAGGAGGCACAGAGGAGACATCAACATTATGATGAACTGGCTTTGCAGGGTCGTTTCTCTTCTGCCCTTTTAGTTGTGAGGGAACATCTTCCTTCTGGAAAGGCATGTCTGAGATTGAACATCGATGCGACAAGAATAGGAAACGTTGCACGGTTTGTAAATCATTCATGTGACGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTCTGCTTCTTTGCTTCAAAAGATATCCAAGTAGATGAAGAACTTACTTTTAGCTATGGAGAAATCAGGAAAAGGCCTAATGGGTTGCCATGCTTTTGCAATAACCCTTCTTGCTTTGGAACATTGCCCTCTGAAGACACTTGA 1023 0.5523 MAEESVPTKRCNAKEPLLLQCAELVLPYLTPSELANVSLTCKSLHKLSHSITLRRASDASRTFETLPIPFLNTAEDAHPYAHFLYTRFLLLPSPFLLPRQPWGSSVISPSPQRHLRAESVGLVDGSGRAVSGCECEDCRGSSACPCAAGLDGLDDVGRECGPGCRCGPECGNRLARNGVAVKVKIVRDGRKGWGLHADQFIPKGEFVFEYAGELLTTKEAQRRHQHYDELALQGRFSSALLVVREHLPSGKACLRLNIDATRIGNVARFVNHSCDGGNLSTKLVRSSGALFPRLCFFASKDIQVDEELTFSYGEIRKRPNGLPCFCNNPSCFGTLPSEDT 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01405 340 SUPERFAMILY SET domain 66 333 IPR046341 -
Pumo1g01405 340 CDD F-box_SF 21 49 - -
Pumo1g01405 340 SMART set_7 181 319 IPR001214 GO:0005515
Pumo1g01405 340 ProSiteProfiles SET domain profile. 181 313 IPR001214 GO:0005515
Pumo1g01405 340 Pfam SET domain 192 313 IPR001214 GO:0005515
Pumo1g01405 340 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 113 327 - -
Pumo1g01405 340 Gene3D SET domain 37 319 IPR046341 -
Pumo1g01405 340 SUPERFAMILY F-box domain 21 88 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01405 Pumo-Chr1 23117517 23120447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01405 159 335 C2H2 Transcription Factor Family AT2G23740 34.211 1.29e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo1g01405 SET 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01405 K11433 - gmx:100786871 565.459