Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01400 ATGGAGCTATTCCCAGCACAGCCAGATTTGTCCTTGCAAATCAGCCCTCCAAACAGCAAACCCACATCAAGGAGAAGCACACAAGAGGAGATGGATTTGGGATTCTGGAAGAGAGCTTTGGAGTCCACAACAAACCCCTTATTAGTCAAAACAAGGGCTTCTTCAAACACCAACATCACCCCAAACCCCAACCTTACCCACCACTTCCAAAACATTAACAACAACAGCAACAATAATAATGTCAACCCCATCCAACAAAACCACTTATTTCACCACCAAAGCCTTAGCCAAAACCTAGGTTTTCTAAGACCCATTAGAGGAATCCCAGTGTACCAAAACCCTCCTTTTTCATTTGCTCATCATCCACAGCCCCTACATTATTCTCCCTCCAACAACACACCAACAACTTCAAGCCCTTTCCTTTCTCAAGCTCTGATGAAGTCAAGGTTCCTCTCACGCTTTCCTTCCAAACGCAACATGAGGGCTCCTCGGATGCGTTGGACCACTACTCTCCATGCTCGCTTTGTCCATGCCGTTCAGCTTTTGGGTGGCCATGAAAGGGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTAAAAGATCTCACTTTAGCACATGTCAAATCTCACTTGCAGATGTACCGGACAGTGAAAACTACAGATAGAGCCACGGCATCATCGGGGCAATCTGATATTTATGATAATGGCTCATCTGGAGATACTTCTGAAGACTTCATGTTTGATATAAACTCTCCAAGAAGGTCTGATCTATCTATTAAGCAGGCAAGAACAAGTGTTCATCAAGATAATGAAAATTGTGGCCTTTGGAACAACTCTTCCAGGGAAGCTTGGTTGCATGGCAAGCCACAGGTTGATTCTATTGGAAACGTGCCTTCTGTTGAGGTTTGTATAATATTACTCAATTCAATGCCCCTTTATCTCCCCAATTGTGGCCTTTTAGGTTACAAATTAAGTATTAATTTTAATCAAACATCTATGTATTGCTGCGCTTGGAATGCATGA 1023 0.4321 MELFPAQPDLSLQISPPNSKPTSRRSTQEEMDLGFWKRALESTTNPLLVKTRASSNTNITPNPNLTHHFQNINNNSNNNNVNPIQQNHLFHHQSLSQNLGFLRPIRGIPVYQNPPFSFAHHPQPLHYSPSNNTPTTSSPFLSQALMKSRFLSRFPSKRNMRAPRMRWTTTLHARFVHAVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRATASSGQSDIYDNGSSGDTSEDFMFDINSPRRSDLSIKQARTSVHQDNENCGLWNNSSREAWLHGKPQVDSIGNVPSVEVCIILLNSMPLYLPNCGLLGYKLSINFNQTSMYCCAWNA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01400 340 Pfam Myb-like DNA-binding domain 164 215 IPR001005 -
Pumo1g01400 340 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 291 IPR044847 GO:0000976|GO:0006355|GO:0010158
Pumo1g01400 340 NCBIfam myb-like DNA-binding domain, SHAQKYF class 163 216 IPR006447 GO:0003677
Pumo1g01400 340 Gene3D - 162 219 - -
Pumo1g01400 340 MobiDBLite consensus disorder prediction 1 29 - -
Pumo1g01400 340 FunFam Myb family transcription factor 161 219 - -
Pumo1g01400 340 SUPERFAMILY Homeodomain-like 160 216 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01400 Pumo-Chr1 23046615 23051925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01400 1 301 G2-like Transcription Factor Family AT4G17695 43.082 5.06e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo1g01400 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01400 - - aprc:113868756 423.32