Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01399 ATGGAAGCTAGAAAAGGGTTAGAATATTTGAAACATAAAAGGCTTCAGCGAGCAAAATCTGCTACTGCTGGTGCCACTGCAACAAGAATTGCTAACGTGATGAACAGAAGTGGAGGAGATGCTCTTAGAGCTTCTGCATCGTGTAGTGTGAGGTTGCATGGTGATACAGATGGTTTTTCCAAGCGGAAGGTTGATAAGTTTGACACAAGTGATCTGGCATGGACTGAGAAAATTCCTGAGTGTCCAGTATATTATCCAACAAAGGAGGAATTTGAGGATCCCTTGCTTTATTTGCAAAGAATAGCTCCCGAAGCTTCTAAATATGGTATATGCAAGATTATTTCACCCTTGACTGCTTCTGTTCCTGCTGGGGTTGTTTTAATGAGGGAGCAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCCCTCCGTCTTGCCGAATGGGATACTGAAGACAAAGTCATGTTTTTCATGAGTGGAATAAGTTATACATTTCGTGATTTTGAAAAGATGGCAAACAAGGCTTTTGCGCAAAAATATTGCAGTGCTGGATGTCTACCTGCCACATATTTGGAGAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCGCCCACTGATCAACTTGGGAAAAGCAAATGGAATTTGAAGAAATTTTCGTGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATTCCAGGAGTGACAGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCATTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACACGTGTATACTAACGATATTTTGTCAACTGGTGGGGAAGATGGAGCCTTTGATGTTCTCCAGGGGAAAACAACTCTGTTCCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTTTATAATAACTTTCCCCAGGTCATATCATGCCGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTCGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCTAGCCAAAGATATGCACTTCTTCAGAGAGTTCCTTTGCTGCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAAGATTAAAACTTGAAGATTCAGACAATCCCTCTGAAGATTTGTTGTCTCGTAATTGTGTTAAGATTTCTTTTGTCAATTTGATGCGCTTTCAACATTGTGCTCGTTGGTTCTTAATGAAATCAAGGGCATGTACAAGTGTTTCTTCACATTCCCAGGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACATGCATCCAGTATGCCTTCACCATGATATAGAATCTCTTGACTTCACTTGTGGGACCAAACACACACTTTATCTTAGGGAAGATGCTTCAGATATGGAAGCTGCAGCCAAGAGATTTGAGCAGGAAGATGGAATATTGAATGAGATACTTAAGCAAATGAAAAGTGACAAAAGCATGTATCCATACCCTTTGTCAAACATGTTCCAGATGGCTGAGGCAAATGGATATACACCTTATTGTGAGATGAAATTTGATAGTGTTAATAATTTTTATGCCACCCCAAAGCTGTCAACAAATAATCAAGAGTTTTCTGTACAAAGTCAATTTGTTTCTAGACCTGAAGTATCTTCTGCTGCATCTGCTCTATGTTCTCTTTCCAAACCTCTTGAGATCTCTGCTTCCAATAGTGATGAGGCGCATGCTAACTTCAAATTCGGCACTACTGATTTTGAAGAGCTTTGTGAAAGAATGTCCAATAATGCTTCTGAATCTTTGCGACCCCCTGCTCAGTATGAATGCCCTAATAAATCTATGGGCAATGTTCATAGATTAGAGAAGAAGCTTGTTGTGGATAACGAGAGTGACGATTCTGATTCAGAGATTTTTAGGGTAAAGCGTCCTTCTTCTCTTATGGTAGAGAGGAGAAATGTAAGAAGCACTATGTCTTCAAGGCATTCTGAGCAGCAGGGACTTAAACAATTGAAGAAAGTCCATCACGAAGGAAGGAGTGTGCAACCAACAGATATCAGCAAAAGTAAGGAATCAAGTTACGAATATAGTCATGATGTTAGTCATAAGGTTAATGGTGACATCTGCTTGAGGGACAAATTTGCAAGGGGAAACAGCATTCCCATGTCCGTAAGATATAAGAAGACAAGCAATGAGGAAGTTAGTAGACGACGACATCAATGCCGGACAGATAGGTTGCAGCAGATGACATATAGGGAACCGCCACCCATGGAGGTTGGTCCAAAGCGCCTTAAAGCTCGAGGTCCTTCATTTCTGGGCTTAGAGAGCAGCAGATTGAATTGA 2517 0.4108 MEARKGLEYLKHKRLQRAKSATAGATATRIANVMNRSGGDALRASASCSVRLHGDTDGFSKRKVDKFDTSDLAWTEKIPECPVYYPTKEEFEDPLLYLQRIAPEASKYGICKIISPLTASVPAGVVLMREQAGFKFTTRVQPLRLAEWDTEDKVMFFMSGISYTFRDFEKMANKAFAQKYCSAGCLPATYLEKEFWNEIGCGKMETVEYACDVDGSAFSSSPTDQLGKSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSTGGEDGAFDVLQGKTTLFPPNILLEHEVPVYKAVQNPGDFIITFPRSYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLQRVPLLPHEELLCKEAMLLYARLKLEDSDNPSEDLLSRNCVKISFVNLMRFQHCARWFLMKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHMHPVCLHHDIESLDFTCGTKHTLYLREDASDMEAAAKRFEQEDGILNEILKQMKSDKSMYPYPLSNMFQMAEANGYTPYCEMKFDSVNNFYATPKLSTNNQEFSVQSQFVSRPEVSSAASALCSLSKPLEISASNSDEAHANFKFGTTDFEELCERMSNNASESLRPPAQYECPNKSMGNVHRLEKKLVVDNESDDSDSEIFRVKRPSSLMVERRNVRSTMSSRHSEQQGLKQLKKVHHEGRSVQPTDISKSKESSYEYSHDVSHKVNGDICLRDKFARGNSIPMSVRYKKTSNEEVSRRRHQCRTDRLQQMTYREPPPMEVGPKRLKARGPSFLGLESSRLN 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01399 838 SUPERFAMILY Clavaminate synthase-like 159 414 - -
Pumo1g01399 838 SMART cupin_9 225 398 IPR003347 -
Pumo1g01399 838 MobiDBLite consensus disorder prediction 724 742 - -
Pumo1g01399 838 Pfam C5HC2 zinc finger 478 529 IPR004198 -
Pumo1g01399 838 FunFam Lysine-specific demethylase isoform A 76 425 - -
Pumo1g01399 838 Gene3D Cupin 74 403 - -
Pumo1g01399 838 SMART JmjN_1 80 121 IPR003349 -
Pumo1g01399 838 PANTHER LYSINE-SPECIFIC DEMETHYLASE 73 793 - -
Pumo1g01399 838 ProSiteProfiles JmjC domain profile. 228 398 IPR003347 -
Pumo1g01399 838 MobiDBLite consensus disorder prediction 798 838 - -
Pumo1g01399 838 MobiDBLite consensus disorder prediction 710 750 - -
Pumo1g01399 838 ProSiteProfiles JmjN domain profile. 81 122 IPR003349 -
Pumo1g01399 838 Pfam JmjC domain, hydroxylase 258 381 IPR003347 -
Pumo1g01399 838 Pfam jmjN domain 82 114 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01399 Pumo-Chr1 23033440 23042023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01399 78 548 JUMONJI Transcription Factor Family AT2G34880 31.066 4.64e-63 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo1g01399 JmjC 4.3e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01399 - - vra:106765852 1335.47