Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01397 ATGGACGGCGCGAGCAGCAGCGGGGGCGGAGGAGAATCGTCCACCACGGCGGCAGCGGCACCGCCGCCGGCTCCGGTGCCGATTCCGAATGCGAACAACGCGCCGCCGCCTTTCCTGAGCAAGACGTACGAGATGGTGGACGACCCTTCGACGGACGCCATAGTGTCGTGGAGCCCGACGAACAACAGCTTCGTGGTTTGGAACCCTCCCGAGTTCGCCAGAGATCTCTTGCCCAAACACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGTTGAACACCTACGGTTTTAGGAAGGTAGATCCAGATCGCTGGGAATTTGCAAATGAGGGATTTTTAAGGGGTCAAAAGCACTTGCTTAAGACTATAACTCGGCGGAAACCTGCCCATGGTCATAATCATCAACAGGCACAGCAAGCACATGGACAGAGTTCATCAGTTGGGGCTTGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAGACTACTGATAACCAGCTGCAGGCTATGGTTCAGCGCCTTCAAGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTAGCTCAATTTGTACAACAGCAAAATGAGGGTAATAGACGCATAACAGAGGCAAACAAAAAACGTCGGCTTAAGCAGGAAGGTACCGCTGCTTCTGATGGGCAAATTGTTAAATATCAACCACTGATAAATGAAGCAGCAAAAACAATGCTAAGGAAAATGATGAAATTGGATACTTCTCAACTAGATACTTTTAGTGATAACCCCGATAATTACTTGATTGGTGATCATTCGTCATCATCCAGTGCAATGGACAGGGGAAACTCTTTGAGCCGGACTTCTGGAGTAACACTTCAAGAGGTCCCTCTAACTACAATGCAGTCTTCTCACGTGCCATCTACAACAGGGACTCAAGGGCATGGCCCTTCAACAGGAAAATCTGAGATTCTATCTTCTCCCCAAGTTGCAGCCTGTGAAGAAGTTACGAAAGCTCAGTACTCTAATGCACCTGCTATCCCTGTTACTCAAACAGATGAAATCATGCCGGACCTCTCTACAATACCAGATATAGTGGCAGGAAATATTCTTGATATTCCTCAAGAAAATTATATGGCACCTGAGACAGGCGGCAGTGAGGGATATATGGATCCTACTTCATTTGGAGTGAATATGTCATTGCCCATTGATTTTGATAGTATTTCACCTGAAACAGACATTGATGATTTGTTGAACAATCCTCACTTTTGGGATGATCTTCTGAGAACTCCAGTGTCAGAGGAGATCGAGACAAATGGTGCTGAAGTATTCAAGGAGAATGAGGTGCAGCCAATGGAAAATGGATGGGACAAATCTCAACATTTGGACCATCTTACTGAGCAGATGGGCCTACTTTCTTCTGATGCAAAAAGAATTTGA 1518 0.4671 MDGASSSGGGGESSTTAAAAPPPAPVPIPNANNAPPPFLSKTYEMVDDPSTDAIVSWSPTNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTITRRKPAHGHNHQQAQQAHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQTTDNQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNEGNRRITEANKKRRLKQEGTAASDGQIVKYQPLINEAAKTMLRKMMKLDTSQLDTFSDNPDNYLIGDHSSSSSAMDRGNSLSRTSGVTLQEVPLTTMQSSHVPSTTGTQGHGPSTGKSEILSSPQVAACEEVTKAQYSNAPAIPVTQTDEIMPDLSTIPDIVAGNILDIPQENYMAPETGGSEGYMDPTSFGVNMSLPIDFDSISPETDIDDLLNNPHFWDDLLRTPVSEEIETNGAEVFKENEVQPMENGWDKSQHLDHLTEQMGLLSSDAKRI 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01397 505 PRINTS Heat shock factor (HSF) domain signature 38 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g01397 505 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g01397 505 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g01397 505 Coils Coil 156 183 - -
Pumo1g01397 505 SMART hsfneu3 34 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g01397 505 FunFam Heat shock transcription factor 1 31 128 - -
Pumo1g01397 505 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 32 307 IPR027725 -
Pumo1g01397 505 Gene3D - 30 128 IPR036388 -
Pumo1g01397 505 MobiDBLite consensus disorder prediction 1 39 - -
Pumo1g01397 505 MobiDBLite consensus disorder prediction 20 34 - -
Pumo1g01397 505 SUPERFAMILY "Winged helix" DNA-binding domain 33 127 IPR036390 -
Pumo1g01397 505 ProSitePatterns HSF-type DNA-binding domain signature. 77 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo1g01397 505 MobiDBLite consensus disorder prediction 325 349 - -
Pumo1g01397 505 Pfam HSF-type DNA-binding 38 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01397 Pumo-Chr1 22997472 23002038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01397 4 499 HSF AT1G32330 52.632 1.60e-164 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo1g01397 HSF_DNA-bind 5.3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01397 K09419 - gmx:732544 808.905