Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01395 ATGAGCTTTCAGGACATCGAGGCCGGGCGAACCTCATTCGGGTCGAGGCGCGGGCTGATCAATGGGAAGCAGCAGGACCCCACGCAGGCGGTGGCTGCCGGAATATTCCAGATCAACACCGCCGTGTCCACTTTTCAGAGACTCGTCAACACCCTCGGAACCCCCAAGGACACCCCCGACCTCCGCGAGAAGCTCCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATGCAAGCAAGAAGATTGCAGATGCTAAACTTGCAAAAGATTTTCAAGCAGTATTGAAAGAGTTTCAGAAGGCACAACGTCTTTCAGCTGAGAGGGAAACAGCATACACTCCTTTTGTTCCACAAGCAGTCAATCCTTCGAGCTATACAAATGGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCGTGCCCTGCTTGTGGAATCAAGGAGGCAAGAGGTTTTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAGGTTAATGAAATCTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAGCCATGATTGATGATATTGGCTCCAACATTGAAAACTCCCATGCAGCAACAGCACAAGCAAAATCTCAACTTGCAAAAGCTTCAAAAACTCAAAGATCAAATTCCTCTTTGACATGCTTGCTTTTGGTGATTTTCGGGATCGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAG 828 0.4626 MSFQDIEAGRTSFGSRRGLINGKQQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPDLREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAVNPSSYTNGEVDVGSDKSPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01395 275 FunFam Syntaxin-22 like 175 275 - -
Pumo1g01395 275 Gene3D - 21 135 - -
Pumo1g01395 275 PANTHER SYNTAXIN 28 267 IPR045242 -
Pumo1g01395 275 Gene3D - 176 275 - -
Pumo1g01395 275 ProSitePatterns Syntaxin / epimorphin family signature. 188 227 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pumo1g01395 275 SMART tSNARE_6 177 244 IPR000727 -
Pumo1g01395 275 CDD SynN 25 150 IPR006011 GO:0016020
Pumo1g01395 275 SUPERFAMILY t-snare proteins 25 237 IPR010989 GO:0016020|GO:0016192
Pumo1g01395 275 CDD SNARE_Qa 202 243 - -
Pumo1g01395 275 Pfam Syntaxin-like protein 32 131 IPR006011 GO:0016020
Pumo1g01395 275 FunFam Syntaxin-22 like 21 135 - -
Pumo1g01395 275 SMART SynN_4 16 129 IPR006011 GO:0016020
Pumo1g01395 275 Pfam SNARE domain 219 270 IPR000727 -
Pumo1g01395 275 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 182 244 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01395 Pumo-Chr1 22986222 22990764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01395 1 263 SNARE and Associated Proteins AT5G46860 77.567 3.58e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01395 - - gmx:547656 417.157