Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01391 ATGTCCGACCGAGGTGCATTTTCCGGAGGTGGCGTCTCGGCCTTGGAAACAAAGAAGGAAAAGTTCACACAGCAGGAACGAAAGGTTCCTTTTCTCAAGCTCTTCTCCTTTGCGGACTTCTACGATTGCGTTTTGATGGCGGTTGGATCTGTTGGGGCATGTGTTCATGGCGCCTCTGTGCCTGTTTTCTTTGTCTTCTTTGGGAAGATTATCAATGTCATAGGGTTAGCTTACCTCTTCCCCAAAGAAGCTTCCCACGAAGTTGCCAAGTATGCGTTGGATTTTGTGTATCTAAGCATAGCAATATTGTTTTCATCATGGACAGAGGTGGCTTGTTGGATGCACACTGGGGAACGTCAAGCTGCAAAGATGAGGATGGCATACTTAAGATCAATGTTGAATCAAGATATAAGCCTTTTTGATACCGAGGCTTCTACCGGAGAGGTTATTTCTTCTATTACAAGTGACATCATCGTTGTTCAAGATGCACTGTCTGAGAAGGTTGGGAACTTCATGCACTACATAAGCCGTTTTATCGCAGGCTTTACCATTGGCTTTGTCAGAGTGTGGCAGATCAGTTTAGTGACACTTGCCATTGTACCCTTGATTGCCCTTGCTGGAGGTCTTTACGCATACGTGACAATTGGCCTTATTGGAAAAGTTCGAAAATCATATGTGAGGGCTGGTGAAATCGCTGAAGAGGTGATAGGCAATGTGAGAACGGTGCAAGCATTTGCAGGAGAAGAAAGAGCAGTGAGATCATACAAAGTGGCTCTGATGAACACATATAAAAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTGGGACTAGGCTCTATGCATTGTGTCCTTTTCCTTTCATGGGCTCTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGAATATCGCCAATGGTGGCGACGCTTTCACTACCATGCTCAATGTAGTCATTTCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATTTCTGCATTTATCAGAGCAAAAGCAGCAGCTTATCCCATTTTTGAGATGATAGAGAGGGACACAATGAGCAAAGTTAGCTCAGAAAATGGTCGAAAGTTAAGCAAATTGGAAGGTCACATCCAATTTATGGATGTGTGTTTCAGTTATCCATCTCGTCCTGATGTGGTTATCTTCAACAATTTTCGTCTTGAGATTCCTTCAGGGAAAATTTTGGCTCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACAGTTGTATCATTGATTGAGCGCTTCTATGAACCACTTTCTGGTCAAATACTGATAGATGGGAACAATATCAGGGAACTTGATCTCAAATGGCTTAGACAGCAAATTGGACTTGTTAACCAAGAACCTGCACTTTTTGCTACAAGCATCAGGGAGAATATACTGTACGGAAAAGATGATGCCACTTTTGAAGAAATAAATCGAGCTGTGATGCTTTCTGATGCTCAGTCTTTCATTAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGGATACAATTATCAGGGGGACAGAAACAAAGGATTGCAATATCTCGTGCTATAGTTAAGAATCCATCAATCCTTTTATTAGATGAAGCAACCAGTGCTCTGGATGCAGAGTCTGAGAAAAGTGTACAGGAGGCTCTTGACCGTGTCATGGTGGGTAGAACAACCGTGATAGTTGCACACAGACTTTCAACCATTAGGAATGCAGATATGATCGCTGTTGTTGAGGGAGGGAAGGTGGTGGAAATTGGCAATCATGAGGAACTCATTTCCAACCCAAGTAATGTATATGCATCTCTTGTTCAAATCCAAGAAACAGCCTTTTCTAAAGGCCACCTTTCTGCGGATCCTTACTCGGGAGGGTCATCAAGGTACTTGGGAGGTTCATCAAGGTACATGGGAGGATCATCAAGGTACTTGGGAGGGTCATCAAGGCGCCTAGGAGAGTCATCATCTCGCGCAACAAGCTTTCGTGGTAGTTTCCATTCAGATAGAGAATCAACTAGCCGGGCTTTTGGTGATGGAGCAGAAAGTGTTGGAAGTTCAAGGCATGTCTCAGCAAGAAGACTGTATTCCATGATTGGTCGTGATTGGCTTTATGGTGTTTTTGGAACCTTGGGTGCATTCATTGCTGGAGCACAGATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTGTCTTATTACATGGACTGGGATACAACACGACATGAAGTGAAAAAAGTTGCTTTCCTCTTCTGTGGGGCAGCAGTTTTAACCATCACTGCCCATGCCATTGAACATCTTTCCTTTGGAATCATGGGGGAACGACTTACCCTTCGCGCAAGAGAAAAAATGTTTTCTGCTATTTTGAAGAGTGAAATTGGCTGGTTTGATGACATAAACAACACAAGTTCTATGCTTTCGTCACGTCTAGAGACTGATGCAACATTTTTAAGAACTGTAGTTGTTGATCGTTCAACGATTCTTCTGCAGAATGTTGGTCTGGTTGTTGCTGCATTTATCATTGCCTTCATGTTGAACTGGAGGATAACTATTGTTGTATTGGCCACATACCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTATTCATGCAAGGCTTTGGTGGCAACCTGAGCAAAGCATATCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTGAGTAATATCCGCACTGTGGCTGCATTTTGTGCTGAACAAAAGGTCCTTGACCTTTATGCTGATGAGCTTGTGGAGCCTTCCAAGCGTTCATTCAATCGAGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTGTGTTGATGGCAAAGGAGCTTTCTAGCTTCAAATCACTTATGAAGTCATTCATGGTTTTAATTGTAACAGCACTGGCTATGGGGGAGACTTTGGCACTGGCACCTGACCTTTTGAAAGGAAATCAAATGGTTGCATCGATTTTTGAAGTGATGGATAGAAAGACAGGAATATTGGGTGATGTTGGAGAAGAGCTGAAGACAGTGGAAGGAACAATTGAGCTAAAGAGAATCCATTTCAGCTACCCTTCAAGGCCAGACGTGATTATTTTTAATGATTTCAATCTTACAGTGCCTGCAGGAAAGAATATTGCCTTGGTGGGACATAGTGGTTGTGGCAAAAGCTCAGTCATCTCCCTTATACTCAGATTTTATGATCCAACAACTGGGAAGGTGATGATTGATGGAAAAGACATCAAGAAACTCAATTTGAAATCCCTTAGGAAACATATTGGCCTTGTGCAACAAGAACCAGCTCTTTTTGCAACATCAATTTATGAAAATATTCTTTATGGAAAGGAAGGAGCCACAGAAGCAGAAGTGATTGAAGCAGCTAAACTTGCCAATGCTCATAGCTTTATCAGTGCTCTTCCTGAGGGCTACTCCACCAAAGTAGGTGAGAGAGGAGTTCAACTGTCTGGTGGCCAGAAACAAAGGGTAGCTATTGCCAGGGCTGTGTTGAAAAACCCTGAAATTTTGCTGCTAGATGAAGCCACCAGTGCACTGGATTTGGAGTCCGAGCGTGTGGTGCAACAAGCTCTAGACAAATTGATGCAGAACAGAACAACAGTGATTGTGGCACATAGGCTATCCACAATAACAAATGCAGACCAAATAGCAGTCTTAGAGGATGGAAAGATAATTCAGAAAGGGACTCATGCAAGACTTGTAGAGAACACAGATGGAGCATACTACAAATTAGTCAGCCTTCAACAACAGCAGCATGTACAAGAACATAATGATTGA 3822 0.4314 MSDRGAFSGGGVSALETKKEKFTQQERKVPFLKLFSFADFYDCVLMAVGSVGACVHGASVPVFFVFFGKIINVIGLAYLFPKEASHEVAKYALDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISSITSDIIVVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLAIVPLIALAGGLYAYVTIGLIGKVRKSYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKVALMNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKNIANGGDAFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTMSKVSSENGRKLSKLEGHIQFMDVCFSYPSRPDVVIFNNFRLEIPSGKILALVGGSGSGKSTVVSLIERFYEPLSGQILIDGNNIRELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATFEEINRAVMLSDAQSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIAVVEGGKVVEIGNHEELISNPSNVYASLVQIQETAFSKGHLSADPYSGGSSRYLGGSSRYMGGSSRYLGGSSRRLGESSSRATSFRGSFHSDRESTSRAFGDGAESVGSSRHVSARRLYSMIGRDWLYGVFGTLGAFIAGAQMPLFALGISHALVSYYMDWDTTRHEVKKVAFLFCGAAVLTITAHAIEHLSFGIMGERLTLRAREKMFSAILKSEIGWFDDINNTSSMLSSRLETDATFLRTVVVDRSTILLQNVGLVVAAFIIAFMLNWRITIVVLATYPLIISGHISEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEQKVLDLYADELVEPSKRSFNRGQIAGIFYGISQFFIFSSYGLALWYGSVLMAKELSSFKSLMKSFMVLIVTALAMGETLALAPDLLKGNQMVASIFEVMDRKTGILGDVGEELKTVEGTIELKRIHFSYPSRPDVIIFNDFNLTVPAGKNIALVGHSGCGKSSVISLILRFYDPTTGKVMIDGKDIKKLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGATEAEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDLESERVVQQALDKLMQNRTTVIVAHRLSTITNADQIAVLEDGKIIQKGTHARLVENTDGAYYKLVSLQQQQHVQEHND 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01391 1273 MobiDBLite consensus disorder prediction 645 679 - -
Pumo1g01391 1273 Pfam ABC transporter 1044 1192 IPR003439 GO:0005524
Pumo1g01391 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1025 1261 IPR003439 GO:0005524
Pumo1g01391 1273 FunFam ABC transporter B family member 1 33 369 - -
Pumo1g01391 1273 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524|GO:0016887
Pumo1g01391 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 608 IPR027417 -
Pumo1g01391 1273 Gene3D ABC transporter type 1, transmembrane domain 94 1001 IPR036640 GO:0005524|GO:0016020
Pumo1g01391 1273 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 343 - -
Pumo1g01391 1273 SUPERFAMILY ABC transporter transmembrane region 692 1006 IPR036640 GO:0005524|GO:0016020
Pumo1g01391 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 706 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo1g01391 1273 ProSitePatterns ABC transporters family signature. 1164 1178 IPR017871 GO:0005524|GO:0016887
Pumo1g01391 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1019 1263 IPR027417 -
Pumo1g01391 1273 CDD ABC_MTABC3_MDL1_MDL2 1025 1263 - -
Pumo1g01391 1273 FunFam ABC transporter B family member 4 360 614 - -
Pumo1g01391 1273 SUPERFAMILY ABC transporter transmembrane region 33 340 IPR036640 GO:0005524|GO:0016020
Pumo1g01391 1273 PANTHER ABC TRANSPORTER B FAMILY 14 612 IPR039421 -
Pumo1g01391 1273 FunFam ABC transporter B family member 4 1015 1270 - -
Pumo1g01391 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo1g01391 1273 CDD ABC_MTABC3_MDL1_MDL2 370 608 - -
Pumo1g01391 1273 SMART AAA_5 1052 1238 IPR003593 GO:0016887
Pumo1g01391 1273 SMART AAA_5 397 591 IPR003593 GO:0016887
Pumo1g01391 1273 Gene3D - 368 660 IPR027417 -
Pumo1g01391 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Pumo1g01391 1273 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Pumo1g01391 1273 Pfam ABC transporter transmembrane region 707 978 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo1g01391 1273 Pfam ABC transporter transmembrane region 51 319 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo1g01391 1273 Gene3D - 1015 1273 IPR027417 -
Pumo1g01391 1273 FunFam ABC transporter B family member 2 826 1022 - -
Pumo1g01391 1273 MobiDBLite consensus disorder prediction 647 662 - -
Pumo1g01391 1273 CDD ABC_6TM_Pgp_ABCB1_D2_like 695 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01391 Pumo-Chr1 22919626 22933996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01391 27 1269 Calmodulin-binding Proteins AT2G36910 51.628 0.0 1235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01391 K05658 - gmx:100809752 2232.22