Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01389 ATGGGTAGGCCACCTTGCTGTAACGAGAGTGGTGTTAAGAAAGGGCCATGGATACCAGAAGAAGATGAAAAGCTAATGAATTATATTAGCAAACATGGAAGGGGAACGTGGAGAACACTTCCAAAGCATGCAGGTCTAAATAGGTGCGGGAAAAGCTGCAGGTTAAGGTGGGAAAACTATCTAAGGCCAGATATTAAGAGAGGAAAATTCACTGAAGAAGAGGAGCAATTGATCATCAACCTTCATTCAGTTCTTGGAAACAAGTGGGCAAAGATTGCTACCCATCTTCCAGGGAGAACTGATAACGAGATAAAGAATTATTGGAACACCAACTTAAGAAAAAAGCTTCTCGAGATGGGAATTGACCCAGAAACTCACAAGCCAAGAACTGACTTCAATCACCTCATCAATCTTTCCCAGATGCTTGGCATCTCAAATTTGGGCACATCAATGAGTCCTTACACAAATCCTCTGGGTTTACAAGCAGATGTGACTGAATTAGCCAAACTACAAGTGCTACAAAATATGTTACAACTTATGAACAACACTTCATTGGTTAACATGGGTAACCCTTACCTCTTAGGCAATCAAATTCTCAACCCACTTGATACATTGAGTAGTCAAGATTATGCAAACCCTGTTGGTAACAATTCTGGTCTGTTACTGTCTCAAACATACAGTGACTCAGCTATCTTCAAATCAGGGACAGAAAAAGAAAGTGAAACTAATCAAGAAATTCTTGGTTATAACCAAAACATCAGCACCTTACCAGAAAATCAAGCAGAAAACTTACTTCCTGCATTAGTGAACTACAACGCAGCACAAATGTCCACCCAGTCACCTCCCTCCACAACCTTTGAGCATTGGGAGAAGTTTCTTATTGATGATGATGAATCAAGCGGTTCCTACTGGAAAGAGATTCTAGACTTGACATTCACTTCTGCACCAACAATTTCCTGGTAG 963 0.406 MGRPPCCNESGVKKGPWIPEEDEKLMNYISKHGRGTWRTLPKHAGLNRCGKSCRLRWENYLRPDIKRGKFTEEEEQLIINLHSVLGNKWAKIATHLPGRTDNEIKNYWNTNLRKKLLEMGIDPETHKPRTDFNHLINLSQMLGISNLGTSMSPYTNPLGLQADVTELAKLQVLQNMLQLMNNTSLVNMGNPYLLGNQILNPLDTLSSQDYANPVGNNSGLLLSQTYSDSAIFKSGTEKESETNQEILGYNQNISTLPENQAENLLPALVNYNAAQMSTQSPPSTTFEHWEKFLIDDDESSGSYWKEILDLTFTSAPTISW 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01389 320 CDD SANT 69 112 IPR001005 -
Pumo1g01389 320 Gene3D - 13 66 - -
Pumo1g01389 320 CDD SANT 16 61 IPR001005 -
Pumo1g01389 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo1g01389 320 PANTHER F14D16.11-RELATED 1 296 - -
Pumo1g01389 320 FunFam MYB-related transcription factor 13 66 - -
Pumo1g01389 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo1g01389 320 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo1g01389 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo1g01389 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo1g01389 320 SMART sant 66 114 IPR001005 -
Pumo1g01389 320 SMART sant 13 63 IPR001005 -
Pumo1g01389 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo1g01389 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo1g01389 320 Gene3D - 69 134 - -
Pumo1g01389 320 FunFam Transcription factor MYB39 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01389 Pumo-Chr1 22893898 22895159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01389 1 313 MYB Transcription Factor Family AT3G02940 46.749 1.29e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g01389 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01389 K09422 - gmx:100803906 562.377