Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01385 ATGGATTATTCTCGGGACGGGAACGTGGTGCAAATAATCACCGGCGGCGGCGGAGAGAGCTGGTCGGGGGACCAGGCCGATTGGGCGACGGAGGACGAGTACCGTTTTTGGAACAACAACAACAATGGGGACGGCGAAACGACGCCGTCGAACTCGAATTACGAGGCGCGGTCGGAGCCGCCGAGCAAGAAGTCGCGGAACAGTTCGCAGGAGGGGAGCTCTTCGAACCGGTCGAAGGCGATCGGGAAGATGTTCTTCAAGACGAAGCTGTGCTGCAAGTTCAGGGCCGGAACTTGCCCTTACATCACCAATTGCAATTTCGCCCACAGCATCGAGGAGCTGCGGCGCCCGCCCCCGAATTGGCAGGAGATCGTGGCGGCCCACGAGGAGGAGAAGGCGGTGATGACGACGGAGCCCAGGGAGGAGTTCCAGATTCCCACTGTGGGGTCTTCCACCTTTGCAGGGGACATGATGCAGAGGTCCTACAAGGGGAGGCATTGCAAGAAGTTTTACACCGAGGAAGGGTGCCCCTATGGGGATAGCTGCACCTTTCTCCATGATGAGCAATCGAAGAATCGCGAGAGTGTTGCTATAAGTTTGGGCCCTGGTGGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGTGGCAATGGTGGTGGTAATGGTGGCGCTAATGCTGTTGGGAATAATGGGTCTAATTCGAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAGTGGGAGATGACAGGGTATTGCCCCTTTGGCAATAAGTGCCATTTTGCTCATGGTGCCACAGAGTTGCACAGATATGGAGGCGGGCTTATGGAGGGAGAAAGTAGAGATGCTGCTTCTGCAGTTGCCAGCGACACAAACAAGGGAGTACCTTCAAAACCTTCTGCTGATAACGTGGTTGCAGCGGCTACTCCGGTTGCTCATTCTGATGTGTATCATATCGGAGTCCCTTCACAGAGGCCTTCTTCCATGGTGATACAGAGGCCAGGACAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATCGAATAA 1095 0.5461 MDYSRDGNVVQIITGGGGESWSGDQADWATEDEYRFWNNNNNGDGETTPSNSNYEARSEPPSKKSRNSSQEGSSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMTTEPREEFQIPTVGSSTFAGDMMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGGGGGNGGGNGGANAVGNNGSNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDAASAVASDTNKGVPSKPSADNVVAAATPVAHSDVYHIGVPSQRPSSMVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01385 364 SUPERFAMILY CCCH zinc finger 240 273 IPR036855 GO:0046872
Pumo1g01385 364 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Pumo1g01385 364 SMART c3hfinal6 85 111 IPR000571 GO:0046872
Pumo1g01385 364 SMART c3hfinal6 242 269 IPR000571 GO:0046872
Pumo1g01385 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 243 268 IPR000571 GO:0046872
Pumo1g01385 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Pumo1g01385 364 MobiDBLite consensus disorder prediction 34 58 - -
Pumo1g01385 364 FunFam Zinc finger CCCH domain-containing protein 81 117 - -
Pumo1g01385 364 Gene3D - 154 200 - -
Pumo1g01385 364 FunFam zinc finger CCCH domain-containing protein 15-like 236 275 - -
Pumo1g01385 364 SUPERFAMILY CCCH zinc finger 83 116 IPR036855 GO:0046872
Pumo1g01385 364 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
Pumo1g01385 364 PANTHER CCCH ZINC FINGER/TIS11-RELATED 235 302 IPR045877 GO:0003729
Pumo1g01385 364 Gene3D - 80 116 - -
Pumo1g01385 364 Gene3D - 235 274 - -
Pumo1g01385 364 MobiDBLite consensus disorder prediction 329 348 - -
Pumo1g01385 364 FunFam Zinc finger, CCCH-type 155 193 - -
Pumo1g01385 364 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Pumo1g01385 364 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Pumo1g01385 364 MobiDBLite consensus disorder prediction 1 77 - -
Pumo1g01385 364 ProSiteProfiles Zinc finger C3H1-type profile. 242 270 IPR000571 GO:0046872
Pumo1g01385 364 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01385 Pumo-Chr1 22840247 22844132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01385 216 272 C3H Transcription Factor Family AT1G68200 42.105 3.10e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo1g01385 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01385 - - gmx:100788208 630.172