Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g01385 | ATGGATTATTCTCGGGACGGGAACGTGGTGCAAATAATCACCGGCGGCGGCGGAGAGAGCTGGTCGGGGGACCAGGCCGATTGGGCGACGGAGGACGAGTACCGTTTTTGGAACAACAACAACAATGGGGACGGCGAAACGACGCCGTCGAACTCGAATTACGAGGCGCGGTCGGAGCCGCCGAGCAAGAAGTCGCGGAACAGTTCGCAGGAGGGGAGCTCTTCGAACCGGTCGAAGGCGATCGGGAAGATGTTCTTCAAGACGAAGCTGTGCTGCAAGTTCAGGGCCGGAACTTGCCCTTACATCACCAATTGCAATTTCGCCCACAGCATCGAGGAGCTGCGGCGCCCGCCCCCGAATTGGCAGGAGATCGTGGCGGCCCACGAGGAGGAGAAGGCGGTGATGACGACGGAGCCCAGGGAGGAGTTCCAGATTCCCACTGTGGGGTCTTCCACCTTTGCAGGGGACATGATGCAGAGGTCCTACAAGGGGAGGCATTGCAAGAAGTTTTACACCGAGGAAGGGTGCCCCTATGGGGATAGCTGCACCTTTCTCCATGATGAGCAATCGAAGAATCGCGAGAGTGTTGCTATAAGTTTGGGCCCTGGTGGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGTGGCAATGGTGGTGGTAATGGTGGCGCTAATGCTGTTGGGAATAATGGGTCTAATTCGAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAGTGGGAGATGACAGGGTATTGCCCCTTTGGCAATAAGTGCCATTTTGCTCATGGTGCCACAGAGTTGCACAGATATGGAGGCGGGCTTATGGAGGGAGAAAGTAGAGATGCTGCTTCTGCAGTTGCCAGCGACACAAACAAGGGAGTACCTTCAAAACCTTCTGCTGATAACGTGGTTGCAGCGGCTACTCCGGTTGCTCATTCTGATGTGTATCATATCGGAGTCCCTTCACAGAGGCCTTCTTCCATGGTGATACAGAGGCCAGGACAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATCGAATAA | 1095 | 0.5461 | MDYSRDGNVVQIITGGGGESWSGDQADWATEDEYRFWNNNNNGDGETTPSNSNYEARSEPPSKKSRNSSQEGSSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMTTEPREEFQIPTVGSSTFAGDMMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGGGGGNGGGNGGANAVGNNGSNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDAASAVASDTNKGVPSKPSADNVVAAATPVAHSDVYHIGVPSQRPSSMVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE | 364 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g01385 | 364 | SUPERFAMILY | CCCH zinc finger | 240 | 273 | IPR036855 | GO:0046872 | |
Pumo1g01385 | 364 | SMART | c3hfinal6 | 161 | 188 | IPR000571 | GO:0046872 | |
Pumo1g01385 | 364 | SMART | c3hfinal6 | 85 | 111 | IPR000571 | GO:0046872 | |
Pumo1g01385 | 364 | SMART | c3hfinal6 | 242 | 269 | IPR000571 | GO:0046872 | |
Pumo1g01385 | 364 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 243 | 268 | IPR000571 | GO:0046872 | |
Pumo1g01385 | 364 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 86 | 110 | IPR000571 | GO:0046872 | |
Pumo1g01385 | 364 | MobiDBLite | consensus disorder prediction | 34 | 58 | - | - | |
Pumo1g01385 | 364 | FunFam | Zinc finger CCCH domain-containing protein | 81 | 117 | - | - | |
Pumo1g01385 | 364 | Gene3D | - | 154 | 200 | - | - | |
Pumo1g01385 | 364 | FunFam | zinc finger CCCH domain-containing protein 15-like | 236 | 275 | - | - | |
Pumo1g01385 | 364 | SUPERFAMILY | CCCH zinc finger | 83 | 116 | IPR036855 | GO:0046872 | |
Pumo1g01385 | 364 | SUPERFAMILY | CCCH zinc finger | 160 | 189 | IPR036855 | GO:0046872 | |
Pumo1g01385 | 364 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 235 | 302 | IPR045877 | GO:0003729 | |
Pumo1g01385 | 364 | Gene3D | - | 80 | 116 | - | - | |
Pumo1g01385 | 364 | Gene3D | - | 235 | 274 | - | - | |
Pumo1g01385 | 364 | MobiDBLite | consensus disorder prediction | 329 | 348 | - | - | |
Pumo1g01385 | 364 | FunFam | Zinc finger, CCCH-type | 155 | 193 | - | - | |
Pumo1g01385 | 364 | Pfam | CCCH-type zinc finger | 165 | 187 | IPR041367 | - | |
Pumo1g01385 | 364 | ProSiteProfiles | Zinc finger C3H1-type profile. | 161 | 189 | IPR000571 | GO:0046872 | |
Pumo1g01385 | 364 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
Pumo1g01385 | 364 | ProSiteProfiles | Zinc finger C3H1-type profile. | 242 | 270 | IPR000571 | GO:0046872 | |
Pumo1g01385 | 364 | ProSiteProfiles | Zinc finger C3H1-type profile. | 85 | 112 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g01385 | Pumo-Chr1 | 22840247 | 22844132 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g01385 | 216 | 272 | C3H Transcription Factor Family | AT1G68200 | 42.105 | 3.10e-07 | 49.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Pumo1g01385 | zf-CCCH | 1.2e-10 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g01385 | - | - | gmx:100788208 | 630.172 |