Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01384 ATGTCTTCGCCGGGGTATGACACGGCGTTACCGCCGGCAACAGCGCCGTACAACACCCCGCCGGCGCTGATAGCGTTCACGCTGGGCGTGCTGGTGGTGTGCTTCGTGGCGTTCAGCATCGTGTACCTCTGCAAGTACTGCTTCTCCAGCGTGATCCACACTTGGGCCTTTCAGCGCACCGCTTCGGGTACCCTCATTCGTCTCACGCCGCACCGGTCGCCGCCACGTGGCCTCGACGCTTCGCTGCTCCAGGTGTTCCCCACCTTCCCTTACTCCTCCGTTAAGGACCTCCGCAAGGATCAGGCCTACGGCCTCGAATGCGCCATCTGTTTGTTGGAGTTCGAGGACGACAACATGCTCCGTCTATTGACCCTCTGCTGCCATGTGTTTCATCAAGACTGCATCGACCTCTGGCTCGGGTCCCACAAGACCTGCCCCGTTTGTCGGCGGGACCTCAATGCACCTCCCGAGGAGGTGCAGAAGCCCGCTGACGTTAATGAGGCGGCAGGTGTTGTGGTGACATCCACCAGCGGGGAGATAAGCATTGACGTAACAACACAAGGGCAAGGCTGCGGTGGTGATGGTGACGATGCGAGTGACGGAAATAAGAAACAAGAAAGTGAACATGAACGTGATCGTGATCATATTCATGATCACGATCACAAGATTCGTCAAGAGGGGGAACAAACGTTTGTCCGGTCGAGATCGCACTCGACCGGGCACTCGATAGTTTGGATCAGAGGAGAGGGAGACGAGGGAAATGATGATGAGAAGTATACGTTGAGATTGCCGGAGCATGTTTTGAGAGAGAGACATAGTAAGCACAATTGTACGAGGAGCTGTGCGAGTTACAAGGACATGGCCATGCTTGTTGCTCCTTCTGCTCCTGCACCTTGTAGTAATTGTGGCTTTGTTCAACCCGTACCAGCTAGCAGCTCCTCCCCTGGCCATACTAAAAAATAA 963 0.5535 MSSPGYDTALPPATAPYNTPPALIAFTLGVLVVCFVAFSIVYLCKYCFSSVIHTWAFQRTASGTLIRLTPHRSPPRGLDASLLQVFPTFPYSSVKDLRKDQAYGLECAICLLEFEDDNMLRLLTLCCHVFHQDCIDLWLGSHKTCPVCRRDLNAPPEEVQKPADVNEAAGVVVTSTSGEISIDVTTQGQGCGGDGDDASDGNKKQESEHERDRDHIHDHDHKIRQEGEQTFVRSRSHSTGHSIVWIRGEGDEGNDDEKYTLRLPEHVLRERHSKHNCTRSCASYKDMAMLVAPSAPAPCSNCGFVQPVPASSSSPGHTKK 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01384 320 CDD RING-H2_EL5-like 106 149 - -
Pumo1g01384 320 FunFam E3 ubiquitin-protein ligase ATL6 67 155 - -
Pumo1g01384 320 MobiDBLite consensus disorder prediction 183 239 - -
Pumo1g01384 320 SMART ring_2 107 148 IPR001841 -
Pumo1g01384 320 MobiDBLite consensus disorder prediction 197 231 - -
Pumo1g01384 320 SUPERFAMILY RING/U-box 98 155 - -
Pumo1g01384 320 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Pumo1g01384 320 Pfam Ring finger domain 106 149 IPR001841 -
Pumo1g01384 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 155 IPR013083 -
Pumo1g01384 320 PANTHER RING FINGER DOMAIN-CONTAINING 14 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01384 Pumo-Chr1 22837630 22838592 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01384 21 270 Rapid Response to Elicitors AT2G35000 33.588 3.07e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01384 - - gmx:100815505 468.774