Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01382 ATGGCTTTGGAAACTCTTGCATCCAATGAGTTTTCCAACTTCATTATCTATGACACTATCTCTGCAACTCCATTTAGCAGCCATGACTCTCCTGAGGCTAGTTTCTTGGAAAGTTTAGTGAACTATCAGGAGCAGCATGACCCTGCATTATTCGATAACTGCGCGATGAGGACCCGAAAGCGCCAAGCCTGCGAGCCAGAAGCCATTGGCAGGAGGCAGAATGTGGTGGGGGTGCAAGGGAGAAAGAAGAGGAGAAGGAAGCCAAGGGTTTGCAAAAACAAGGAAGAGGCTGAGACACAAAGAATCACCCACATTACAGTGGAAAGAAACCGCCGGAAGCAGATGAATGAGCACCTTGCTGTCCTTCGTTCACTCATGCCTGAGTCCTACGTCCAAAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCACCTCTTGCAATCACTTGAAGCTAGAAAGCTGCAACTTCTACAGCAAGAAGTGGCACAAACCAATGAAAATACGGCCATTTCCAAACTCATGCAACCCCCTTTTGCACAATTTTTTTTGTATCCTCAGTACACATGGTCCCAGACTCCTAACAAATACATATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTCACTTTAATCGAGACTCATGCAAATCTTCGAATTCTCACTAGGAGAAGCCCCGGGCAGCTAACAAAGTTAGTAGCTGGTTTTCAAACGCTCTTCCTCACTGTCCTACATCTTAATGTCACCACCATAGACCCTTTGGTATTCTATTCCATCAGTGCCAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGTATTGCAACGGCAGTTCATCATTTGCTTGCAAGAATTGAAGAAGAAGGTTCACTTTGCTGTTGA 909 0.462 MALETLASNEFSNFIIYDTISATPFSSHDSPEASFLESLVNYQEQHDPALFDNCAMRTRKRQACEPEAIGRRQNVVGVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLLQQEVAQTNENTAISKLMQPPFAQFFLYPQYTWSQTPNKYISKTKAAIADIEVTLIETHANLRILTRRSPGQLTKLVAGFQTLFLTVLHLNVTTIDPLVFYSISAKVEEGFQLGSVDGIATAVHHLLARIEEEGSLCC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01382 302 Coils Coil 147 167 - -
Pumo1g01382 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 150 IPR011598 GO:0046983
Pumo1g01382 302 PANTHER MAX DIMERIZATION, MAD 45 297 - -
Pumo1g01382 302 Pfam Helix-loop-helix DNA-binding domain 100 151 IPR011598 GO:0046983
Pumo1g01382 302 Gene3D - 91 172 IPR036638 GO:0046983
Pumo1g01382 302 CDD bHLH_AtFAMA_like 102 161 - -
Pumo1g01382 302 SMART finulus 105 156 IPR011598 GO:0046983
Pumo1g01382 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 168 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01382 Pumo-Chr1 22825419 22827833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01382 91 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 56.044 1.83e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo1g01382 HLH 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01382 - - pvu:PHAVU_003G284500g 520.005