Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01381 ATGAACAGCAAAGACTGTTCTCAAGGATTTTGCAGCTTGTACTGTCCACAGTGGTGTTACATTGTGTATCCTCCTCCTCCACCCTTTGAGTACCCTGATGATGATTCAAGCCCAAATTTCTCACCTCTTGTCATTGCCATCATAGGGATCTTGGCCACTGCTTTTCTTCTGGTGAGTTACTACACTCTAATATCAAAGTACTGTGGCCCCAGAGAGTCTGCACGCAGAGACCCAAATGATGATGACTTGCAAGAAAATCACAATCACAACCACAATTCCTCCAATTCCTCTCTCCATGAACATGCTTCAGTCACAGGCCTGGACGAGGCTCTAATCAAATCCATTGCGGTTTTCAAGTACAAGAAAGGGGTCGGTGGTTCTGTTGGAGTCACGGATTGTGCAGTTTGCCTCAGCGAGTTTCAAGATGGTGAAAGTGTTAGACTCTTGCCGAAGTGCAGCCACGTTTTCCATGTTCCTTGCATTGACACATGGCTCAAGTCTCACTCTACCTGCCCCTTGTGTCGTGCTGGCATATTCACCCCAGAGGTAGAGGCCCCTTCTTCAAGAAACGAAACTTCTTCTGAAAATGAAAGTGTTGTTGGAATTGGAAGTGGCAACAATGAGTTTCGGGTGGTGGTGGTGGAAGAAGAAGAAGAAAGCATACACCATTCTAGAGCGTATCCAAAGCCTGCATTGCGCGCTTTTAGCGATTTAAGTAGCTTTCAGGGCAGGCACAGAGTGATTGAGATTAGAGATGAAGTGTGCGAATCCAGTGTTGTTGGTAGGTCAGTGTCTATGGACCGTTCGTTTCAGAGTGGTCTTTCTGTTGCTGATGTGTTGCAAATGAATGATGAAGAGGAAGATTATTCCCAAGTGGAAGAAGGGTGCGCTGGTCCTTCAAAGAGATCATCACGCGGAGAGAGTAGCAAGTACTCCAGCCACAAAACAAGGGTGTTGCATTGTGTGTTGAGCCCTATTGCAATGAAGAGATCGTTTTCCAGTGGAAGATTCTCAGTTAGCAAAAGTGGCAGAGCAAGGCATGCTATACCCATCTGA 1056 0.4631 MNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGILATAFLLVSYYTLISKYCGPRESARRDPNDDDLQENHNHNHNSSNSSLHEHASVTGLDEALIKSIAVFKYKKGVGGSVGVTDCAVCLSEFQDGESVRLLPKCSHVFHVPCIDTWLKSHSTCPLCRAGIFTPEVEAPSSRNETSSENESVVGIGSGNNEFRVVVVEEEEESIHHSRAYPKPALRAFSDLSSFQGRHRVIEIRDEVCESSVVGRSVSMDRSFQSGLSVADVLQMNDEEEDYSQVEEGCAGPSKRSSRGESSKYSSHKTRVLHCVLSPIAMKRSFSSGRFSVSKSGRARHAIPI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01381 351 CDD RING-H2_EL5-like 132 175 - -
Pumo1g01381 351 SUPERFAMILY RING/U-box 132 181 - -
Pumo1g01381 351 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Pumo1g01381 351 PANTHER RING-H2 FINGER PROTEIN ATL16 28 321 IPR044600 GO:0016567|GO:0016740
Pumo1g01381 351 MobiDBLite consensus disorder prediction 75 99 - -
Pumo1g01381 351 Pfam Ring finger domain 132 175 IPR001841 -
Pumo1g01381 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 179 IPR013083 -
Pumo1g01381 351 FunFam RING-H2 finger protein ATL43 107 182 - -
Pumo1g01381 351 SMART ring_2 133 174 IPR001841 -
Pumo1g01381 351 MobiDBLite consensus disorder prediction 287 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01381 Pumo-Chr1 22814702 22816151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01381 4 331 C3H Transcription Factor Family AT3G03550 41.737 2.67e-61 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01381 - - vun:114176645 477.633