Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01376 ATGGCGTCCGATGGCTTCACCGACAAGAACACTGTGTTCAGGAAGCTCAAGGCCAAGTCCGATAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAAACGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCTAAATACACATCCAGAGCTGCAGACTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCAAAAAGTATGGCTGAGGATGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTGCCCAGGGGGTTAATGGGCTTCCTGAAGTCAGGACCAATGAAGTGCCAAAAGAAAACACTCTGGAGAAGCCAGAAAAGCCTGAGAGCACTTCTTCACCTAGAGCTTCACATTCAATAACTGTTAAGAAACCTATTGGTGGTGCTAAAAAAACTGGGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGACAAGTGAGTCTCTCTATGAGCAGAAGCCTGAGGAACCCCCTGCTCCAGTTTCATCTTCAACAAACAATATGCCTGCTGGGCCATCTCCGACATCTCGGTTTGAGTATGTAGAAAATGTCCAATCATCTGAGTTGAACACTGGAGGTTCACATGTGCTTAGTCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATGGTGGCTTTCCGAAGAAATCTGGGCCAAGCTCCTCCAAAGTGCAAATTCAGGAAACTGATGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGATCAGAACAAAGCTGCGGATATGGATTCTCAAGCTACTTTGTCTAAGTTTTCGGGTTCAAGTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAGCAACATTGATCTTACTGCTAGCGACCTCATCAATCGATTATCTTTCCAGGCACAACAGGATATCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCAGCTCATTGGCCTCCACATTGATGACAGATCTTCAGGACCGAATCCTCTAA 1206 0.4577 MASDGFTDKNTVFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKTMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMAEDGGLPSSPVASQSAQGVNGLPEVRTNEVPKENTLEKPEKPESTSSPRASHSITVKKPIGGAKKTGKSGGLGARKLTKKTSESLYEQKPEEPPAPVSSSTNNMPAGPSPTSRFEYVENVQSSELNTGGSHVLSHVSPPKSSSFFADFGMDGGFPKKSGPSSSKVQIQETDEARRKFSNAKSISSSQFFGDQNKAADMDSQATLSKFSGSSAISSADLFGDSRDSNIDLTASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASTLMTDLQDRIL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01376 401 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Pumo1g01376 401 MobiDBLite consensus disorder prediction 276 308 - -
Pumo1g01376 401 SUPERFAMILY ArfGap/RecO-like zinc finger 11 125 IPR037278 -
Pumo1g01376 401 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 401 - -
Pumo1g01376 401 MobiDBLite consensus disorder prediction 133 147 - -
Pumo1g01376 401 MobiDBLite consensus disorder prediction 126 239 - -
Pumo1g01376 401 Gene3D Arf GTPase activating protein 2 135 IPR038508 -
Pumo1g01376 401 MobiDBLite consensus disorder prediction 155 170 - -
Pumo1g01376 401 MobiDBLite consensus disorder prediction 219 239 - -
Pumo1g01376 401 CDD ArfGap_ArfGap2_3_like 8 123 - -
Pumo1g01376 401 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Pumo1g01376 401 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Pumo1g01376 401 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Pumo1g01376 401 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Pumo1g01376 401 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Pumo1g01376 401 Pfam Putative GTPase activating protein for Arf 11 100 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01376 Pumo-Chr1 22733109 22739463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01376 13 91 C2H2 Transcription Factor Family AT4G21160 47.500 3.59e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01376 K12493 K11855 gmx:100785169 743.421