Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01375 ATGACGGAGTACCGGTCGCCGCCGACGATGAATCTCTGGACCGACGACAACTCCTCCGTGATGGAGGCCTTCATGAGCTCCTCCGACCTCTCCTCCCTCTGGCTCCCCACGCCGCAGTCTGCCACCTCCACCACCACTCAGCCGCCCCCTCCGCCGCCGCTCCTCAATCAGGATACCCTCCAGCAGCGCCTCCAGACGCTAATCGAGGGCGCCAGAGAGAGCTGGACCTACGCCATCTTCTGGCAGTCCTCCTACGACTACTCCTCCGGCACCTCCCTCCTCGGCTGGGGCGACGGCTACTACAAGGGCGAGGAGGACAAATCCAAAGCCCCCAAACCGACGTCGTCCGCGGAACAGGACCACCGCAAAAAAGTCCTCCGCGAACTCAATTCCTTAATCTCCGGCCCCTCCGCCTCCGCCTCCGCCGACGACGTCGACGAAGAAGTCACCGACACCGAGTGGTTCTTTCTCGTGTCCATGACTCAGTCCTTCGTCAACGGAAGCGGCCTCCCGGGCCAGGCTTTTTTTAATTCGACCCCGGTTTGGGTCGCCGGGCCCGATATGTTGTCCGAATCGGCCTGCGAACGAGCCCGCCAGGGGCAGGTGTTTGGGCTTCAGACTTTGGTTTGTATACCGTCCGCAAACGGCGTCGTTGAGCTCGCCTCCACTGAGGTGATTTTCCAGAACCCTGATCTGATGAACAAAGTGCGCGATTTGTTCAACTTCAACAACCCCGAATCCGGTTCCTGGCCGTTGAACTGCGTCTCCACCGATCAGGGCGAGAACGACCCTTCCTCGCTCTGGCTCAACCCTTCTTCCTCCGTCGAAATCAGAGACTCCGAAAACACCGTCCCCACGGAGAATGCAACAGTTAATAACAAGACGCTGCAGTTCGAAACCCCTGGTTCCAGTACCCTAACCGAAACCCCTAGTGCTGCTGCTGCTGCTGCTGGTGTTCCCGCCCCCAACAACGCAAAGAGCTTCTTCCCGAGGGAATTGAACTTCTCGAACTCGCTAAAGCCCGAATCCGGTGAAATTCTGAGCTTCGGGGAGAGCAAGAAGAGCTCTTACAATGGGAGTTTCTTCCCCGGCGTTGCTGCGGTTGAGGAGAACAACAAGAACAAGAAGAGGACTGCTGCTTCTCGGAGCAGCATTGACGACGGAATGCTCTCCTTCACTTCCGGCGTGATCCTTCCGGCTTCGAATGTAAAATCCGGTAATGATGCTGGTGGTGGCGGCGGCGGCGGTGATTCCGATCACTCGGATCTGGAAGCTTCTGTGGTGAAGGAGGCCGACAGCAGGGTGGTGGAACCGGAGAAACGGCCCCGGAAGAGGGGGCGAAAGCCGGCAAACGGCAGAGAGGAGCCGCTGAATCACGTGGAAGCCGAGAGGCAGAGGAGGGAAAAGCTCAATCAGAGATTCTACGCCCTACGAGCTGTAGTTCCAAACGTATCCAAGATGGACAAGGCGTCGCTGTTGGGCGATGCCATATCGTACATAAACGAGCTCAAATCGAAACTCAACGGGCTGGAATTGGAGAAAGAGGAATTGGAGAAGCAATTGGATTCGGCGAAGAAGGAACTCGAGCTCGCAACTAAAAACCCTTCTCCACCACCGCCACCACCACCTGATAACGAAGCAAAGAAGACAACAACGAACAAGCTCGCTGATTTGGAGATAGAGGTGAAGATCATTGGTTGGGATGCGATGATAAGAATCCAATGCAGCAAGAAGAACCACCCTGCAGCGAGGTTGATGGCAGCATTGAAGGACCTGGACCTGGAAGTGCATCACGCCAGCGTGTCCGTGGTGAATGATTTGATGATCCAACAAGCCACTGTGAACATGGGAAACCGGTTTTACACGCAGGAGCAGCTCCTCTCGGCACTCTCGTCCAAAGTTGGCGATTCACGATGA 1917 0.566 MTEYRSPPTMNLWTDDNSSVMEAFMSSSDLSSLWLPTPQSATSTTTQPPPPPPLLNQDTLQQRLQTLIEGARESWTYAIFWQSSYDYSSGTSLLGWGDGYYKGEEDKSKAPKPTSSAEQDHRKKVLRELNSLISGPSASASADDVDEEVTDTEWFFLVSMTQSFVNGSGLPGQAFFNSTPVWVAGPDMLSESACERARQGQVFGLQTLVCIPSANGVVELASTEVIFQNPDLMNKVRDLFNFNNPESGSWPLNCVSTDQGENDPSSLWLNPSSSVEIRDSENTVPTENATVNNKTLQFETPGSSTLTETPSAAAAAAGVPAPNNAKSFFPRELNFSNSLKPESGEILSFGESKKSSYNGSFFPGVAAVEENNKNKKRTAASRSSIDDGMLSFTSGVILPASNVKSGNDAGGGGGGGDSDHSDLEASVVKEADSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLNGLELEKEELEKQLDSAKKELELATKNPSPPPPPPPDNEAKKTTTNKLADLEIEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLDLEVHHASVSVVNDLMIQQATVNMGNRFYTQEQLLSALSSKVGDSR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01375 638 MobiDBLite consensus disorder prediction 422 464 - -
Pumo1g01375 638 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 240 IPR025610 -
Pumo1g01375 638 Gene3D - 446 534 IPR036638 GO:0046983
Pumo1g01375 638 Pfam Helix-loop-helix DNA-binding domain 458 503 IPR011598 GO:0046983
Pumo1g01375 638 CDD bHLH_AtAIB_like 451 527 - -
Pumo1g01375 638 Coils Coil 500 534 - -
Pumo1g01375 638 MobiDBLite consensus disorder prediction 35 56 - -
Pumo1g01375 638 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 523 IPR036638 GO:0046983
Pumo1g01375 638 SMART finulus 460 509 IPR011598 GO:0046983
Pumo1g01375 638 MobiDBLite consensus disorder prediction 403 464 - -
Pumo1g01375 638 MobiDBLite consensus disorder prediction 530 552 - -
Pumo1g01375 638 FunFam Transcription factor bHLH13 447 521 - -
Pumo1g01375 638 PANTHER MYC 22 633 IPR045084 GO:0003700|GO:0006355
Pumo1g01375 638 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01375 Pumo-Chr1 22687151 22689778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01375 1 635 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 57.078 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo1g01375 bHLH-MYC_N 4.8e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01375 K13422 - gmx:100790854 952.584