Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01363 ATGTCTCCGCCACTGCTGGTTACTGAAGACGAAGGGCAGAGCAATGCTTCAATGGTAGCATCTGCATCTTCACCATCCTTGAAAGAACGCAATTACCTGGGTTTGTCAGATTGCTCTTCGGTGGACAGTTCTACTGTCCCGTTGTCTGATGAGAAAAAGGAGAATCTGAATTTGAAGGCTACTGAGTTGAGGCTTGGCCTTCCTGGATCCCAGTCACCTGAAAGGGATCTGGATCTTTTTTCATTGAGCTCAACAAAACTTGATGAGAAACCACTGTTCCCTTTGCTTCCTACAAAGGATGGAATCTGCTCATTGTCCCAAAAAACTGTGGTCTCAGGCAACAAAAGAGGTTTCGCTGACACAATGGACCCTGAGTTTCCTGGCAATGCAGGGATAAACATGATGCTATCACCTAAACCTTCTGGAGTTCAGCCAACCACAGTGAAAGAAATACCAAGCAAGGTGTTACAAGAACGTCCTGCAGCAAATGGAACTGGTCATAACCATACAGGAGCTTCTATCAGTGGCTGTCCACCGGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATTAGATCATTCAGGAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCGGGTGCAGCTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTGAGGAAGGTTGATCTAAGAAATTATACAACGTACCAGGAACTGTCTTCTGCTCTTGAGAAGATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGCTCCGGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCAGAATATGTAGTCACTTATGAAGATAAAGATGGCGACTGGATGCTTGTTGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGGCTGAAAATCATGAAAGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAATCCAGGAGCAGGAGCTAG 1014 0.4596 MSPPLLVTEDEGQSNASMVASASSPSLKERNYLGLSDCSSVDSSTVPLSDEKKENLNLKATELRLGLPGSQSPERDLDLFSLSSTKLDEKPLFPLLPTKDGICSLSQKTVVSGNKRGFADTMDPEFPGNAGINMMLSPKPSGVQPTTVKEIPSKVLQERPAANGTGHNHTGASISGCPPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGAAALFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLKDLLHGSEYVVTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSRSRS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01363 337 MobiDBLite consensus disorder prediction 1 26 - -
Pumo1g01363 337 MobiDBLite consensus disorder prediction 160 180 - -
Pumo1g01363 337 FunFam Auxin-responsive protein 212 329 - -
Pumo1g01363 337 MobiDBLite consensus disorder prediction 7 26 - -
Pumo1g01363 337 ProSiteProfiles PB1 domain profile. 217 321 IPR000270 GO:0005515
Pumo1g01363 337 SUPERFAMILY CAD & PB1 domains 217 318 - -
Pumo1g01363 337 Gene3D - 213 330 - -
Pumo1g01363 337 MobiDBLite consensus disorder prediction 163 177 - -
Pumo1g01363 337 Pfam AUX/IAA family 61 328 IPR033389 -
Pumo1g01363 337 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 56 324 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01363 Pumo-Chr1 22488386 22493823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01363 220 316 B3 DNA Binding Superfamily AT2G46530 35.052 1.19e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo1g01363 AUX_IAA 2.4e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01363 K14484 - gmx:100500373 627.861