Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01360 ATGGAGCTTTCTCAACTTGGTTTCCTAGATGAGTTAGTAGCTCCAAGAAGAGACACATGGAATGCTTTGTCCACTGGATTCTGTGAGCTGTTGCCTAACAATGGTTGGTGTTTTGACACTTTTCTTGAGAACCCTTCTTTGGCCACTTCAAACTCCCCATTTGGTGCATTTTCAGCACCAAGATTTGAATGCCCTTACAGCAATGAAGTAGCAGCAGCATACCCTTTTGCTGATGGGTTCACAATGCCATTGCCAGAGCTTGACCCTGAGAATAATGATGAGCCACCACCACCACCACCACTTCCACCATCACTGGAGGATGCAGAGATTGGCTTTCATGACAAGAGCTTTGAAGAAACCAAGAGTATTGTCTGCAAAGTTGAGGAACAGTGCACAGAGATTCCACTCTTCAACATAGGCATGTGTGATGATGGAGAGAGAAAGCCCAAGTCCAAGAGGCTTGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCCAAGATCAGCAAGATGGATAGGACCTCTATTCTTGGGGATACCATAGACTACATGAAAGAGCTTCTGGAAAGAATTGGTAAATTGCAAGAGGAAGAGGGGGAAAAGGGCACAAATCAGATAAATCTGTTGGGCATTTCAAAGGAACAACTTAAGGCAAATGAAGCAATAGTAAGAAACTCCCCCAAGTTTGATGTTGAGAGGAGAGACCAGGACACCAGGATCGGCATCTGCTGTGCCACAAAACCTGGATTGCTACTATCAACTGTGAATACCTTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATAAGTAGCTTCAATGACTTTTCAATGGAAGCATCTTGTTCTGAGGTAGCTGAACAGAGAAATTGCATTAGCCCTGAAGAGATAAAACAAGCACTATTCAGAAATGCAGGCTTTGGTGGGAAATGTCTCTAG 993 0.4431 MELSQLGFLDELVAPRRDTWNALSTGFCELLPNNGWCFDTFLENPSLATSNSPFGAFSAPRFECPYSNEVAAAYPFADGFTMPLPELDPENNDEPPPPPPLPPSLEDAEIGFHDKSFEETKSIVCKVEEQCTEIPLFNIGMCDDGERKPKSKRLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEGEKGTNQINLLGISKEQLKANEAIVRNSPKFDVERRDQDTRIGICCATKPGLLLSTVNTLEALGLEIQQCVISSFNDFSMEASCSEVAEQRNCISPEEIKQALFRNAGFGGKCL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01360 330 MobiDBLite consensus disorder prediction 89 104 - -
Pumo1g01360 330 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 130 325 - -
Pumo1g01360 330 SMART finulus 162 211 IPR011598 GO:0046983
Pumo1g01360 330 MobiDBLite consensus disorder prediction 82 104 - -
Pumo1g01360 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Pumo1g01360 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 220 IPR036638 GO:0046983
Pumo1g01360 330 Pfam Helix-loop-helix DNA-binding domain 162 205 IPR011598 GO:0046983
Pumo1g01360 330 Gene3D - 145 206 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01360 Pumo-Chr1 22409463 22410809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01360 58 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 52.747 1.70e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo1g01360 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01360 - - gmx:100790319 490.73