Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01350 ATGGCTTTCTTCACCTCTGCTTCAAACTCTAATCAAACCCAAAAACAGACCTTGTTGTTCACATTTATCATCTTCACGTTGTTCCATACACTCTTTACCACTGTAGTGTCCATTTCATTCAACTTTTCAACCTTCCAACAAAACTTGAATAATCTAATAGACTTTAAGGGTGATGCCTTTTCCTCAAACGTTACAAATGTCACTTGGAAGAGCAGCATTAAGAATGGGTCGGTTGCTAATGCTTGGATATGGTACAACTCTACAACCAAAAATCTCTCTGTGTTCCTTACTTATGCTAATAATCCAACCTTTAATGGCAATTCTAGTCTTTGGTATGTCATTGATTTGAGGGATGTGTTGCCAGAGTTTGTTAGAATAGGCTTTTCTGCTGCCACAGGTTCGTGGATTGAAATACACAACATTTTGTCTTGGTCATTCAGTTCAAACTTAGAAGAGGGTGGTAGGAAGAAGGTTAAGGTTGGTTTAGTAGTTGGTTTAAGTGTTGGTTTAGGTTGTTTAGTTTGTGTTGTATGTCTATTATGGTTTACCTTTTGGAGAAGGAGAAATAGAGGAAGGGAGGACAACATAGGTCTTGATGCTTCTATGGATGATGAGTTTGAGAGAGGAACTGGTCCTAAGAGGTTCACCTACCGGGAACTAAGCAACGCAACCAACAACTTTGCTGAAGAAGGAAAGCTAGGAGAAGGAGGATTTGGAGGTGTTTACAAAGGTTTAATTGTAAACTCCAACCTTGAAGTGGCAGTGAAGAGGGTTTCAAAAGGGTCAAAACAAGGGAAAAAGGAATACGTATCAGAAGTGAGAGTAATCAGCCGGCTGAGACATAGAAACTTGGTTCAACTCATAGGGTGGTGCCATGAACAAGGTGAGCTGCTTCTAGTTTATGAATACATGCCAAATGGGAGCCTTGATTCTCATCTGTTTGGAAGTAGAGTCATGCTTTCATGGGTGGTGAGATACAAGGTGGCCTTAGGTTTGGCATCTGCTCTTCTTTATCTTCATGAAGAGTGGGAACAGTGTGTGGTGCATAGAGATATTAAGTCAAGTAATGTCATGCTGGATGCAAATTTCAATGCCAAGCTTGGTGACTTTGGTCTTGCAAGGCTGGTAGACCATGAACTTGGTTCTCAAACCACTGTTTTGGCAGGCACAATGGGGTACCTAGCCCCAGAATGCGTCACCACAGGGAAATCCAGCAAGGAGTCTGATGTGTACAGCTTTGGTGTTGTTGCACTTGAAATCACATGTGGTAGAAAACCAGTGGAAGTGAGAGAAGAACCTAGTAAAGTTAGGCTTGTGGAGTGGGTGTGGAGCCTCTATGGAAAAGGGAAACTCCTTGAAGCAGCTGATAAGAAATTGAATTGGGAATTTGAAGAACAGCAAATGGAATGTTTGATGATTGTTGGGTTGTGGTGTTGTCATCCTGATCATACCATGAGGCCCTCCATTAGGCAAGTGATAAGTGTCCTCAATTTTGAAGCCCCTTTGCCCAGTCTTCCATCCCAATTGCCTGTGCCAATGTATTTTGCACCTCCAATGGAAATGTGCAAATTCTCCTACACTTCATCTGGCACTACAAGCACAATCAAAGAATCCTCCACATACTCATCAATATCGGAAGCGTCCGGAAAATCTCTATTATAG 1662 0.4188 MAFFTSASNSNQTQKQTLLFTFIIFTLFHTLFTTVVSISFNFSTFQQNLNNLIDFKGDAFSSNVTNVTWKSSIKNGSVANAWIWYNSTTKNLSVFLTYANNPTFNGNSSLWYVIDLRDVLPEFVRIGFSAATGSWIEIHNILSWSFSSNLEEGGRKKVKVGLVVGLSVGLGCLVCVVCLLWFTFWRRRNRGREDNIGLDASMDDEFERGTGPKRFTYRELSNATNNFAEEGKLGEGGFGGVYKGLIVNSNLEVAVKRVSKGSKQGKKEYVSEVRVISRLRHRNLVQLIGWCHEQGELLLVYEYMPNGSLDSHLFGSRVMLSWVVRYKVALGLASALLYLHEEWEQCVVHRDIKSSNVMLDANFNAKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEITCGRKPVEVREEPSKVRLVEWVWSLYGKGKLLEAADKKLNWEFEEQQMECLMIVGLWCCHPDHTMRPSIRQVISVLNFEAPLPSLPSQLPVPMYFAPPMEMCKFSYTSSGTTSTIKESSTYSSISEASGKSLL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01350 553 FunFam L-type lectin-domain containing receptor kinase IX.1 212 303 - -
Pumo1g01350 553 SMART serkin_6 227 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01350 553 Gene3D Phosphorylase Kinase; domain 1 212 303 - -
Pumo1g01350 553 CDD STKc_IRAK 241 497 - -
Pumo1g01350 553 Gene3D Transferase(Phosphotransferase) domain 1 304 517 - -
Pumo1g01350 553 Gene3D - 1 160 - -
Pumo1g01350 553 ProSiteProfiles Protein kinase domain profile. 227 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01350 553 SUPERFAMILY Protein kinase-like (PK-like) 211 525 IPR011009 -
Pumo1g01350 553 Pfam Legume lectin domain 1 152 IPR001220 GO:0030246
Pumo1g01350 553 SUPERFAMILY Concanavalin A-like lectins/glucanases 63 247 IPR013320 -
Pumo1g01350 553 ProSitePatterns Protein kinases ATP-binding region signature. 233 256 IPR017441 GO:0005524
Pumo1g01350 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 347 359 IPR008271 GO:0004672|GO:0006468
Pumo1g01350 553 PANTHER - 32 506 - -
Pumo1g01350 553 FunFam Lectin-domain containing receptor kinase A4.3 304 516 - -
Pumo1g01350 553 Pfam Protein kinase domain 228 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01350 553 ProSitePatterns Legume lectins alpha-chain signature. 120 129 IPR000985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01350 Pumo-Chr1 22304241 22306274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01350 61 514 Receptor kinase-like Gene Family AT5G10530 56.494 1.12e-179 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pumo1g01350 Pkinase 2.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01350 - - gmx:100777201 898.271