Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01349 ATGAAGGAGAAGGTGGTGGGTGGGAGGAGCAAACGGGTTCTCTTCCTTTGGTGGTTTGGAATGACTCTGCGTTTTTGTTTCTTGCTCGGTGCCTGTTCTCAGAAGACAACATTAAGAAGAGTTTTAAGGGAGACCCAGGCCGAGCAATCGACAACTTCTAATTCTGGGGTCATGCTGAATACAAACAACCATCAACAGTTGGTGGTTGACAATGGTATTGTTTCCGTCACCTTTGCAAGACCTGAGGGCTACATCCTTGGAATGTCATACAACGGAATTGACAATATACTTGAAGATGAAAACGAAGATCAAGATAGAGGGTACTTTGACGTTGTTTGGAATACACCAGGAAAGCCTAGTAATTTTCAGAGAATCTTCGGGACAAATTTTTCGGTTATAGCAGCTGACGAGAATATGGTGGAGCTTTCATTTTCAAGGACATGGACATCATCCATGAATGGCTCAAGTGTCCCCATGAACATTGACATAAGATACATTTTGCGAAGTGGTGATTCAGGGTTTTATTCATATGCAATATTTGATCGCCCTGAAGGATTTCCCGCGGTGGAGATTGACCAAATTAGGATTGTTTTCAAACTCAAGAAAGACAGGTTCAACTACATGGCAATATCAGATGAAAGGCAGAGAAGCATGCCAACGATGAGAGATAGAGAAACAGGGCAAATCCTGGCATACCCTGAAGCAGTTCTACTAACCAGACCAATCAACCAAGAATTCAGAGGAGAGGTGGATGATAAATACCAGTACTCATGTGAGAACACGGTTAACACTGTTCATGGATGGATCAGTGTTGATGCTGATGCACCCGTGGGTTTCTGGGTGATAACACCGAGCAACGAGTTTCGCAATGCTGGGCCCATCAAGCAGGACCTTACTTCCCATGTTGGCCCCATCACCCTCTCGATGTTTGTGAGTACTCACTATGCTGGCAAGGAGGTAACCATGGCATTTCAAGAAGGGGAGACTTATAAAAAGGTTTTTGGCCCTGTATTTGCCTACGTTAATAACAATGCTTCAAGCGGGGATGATACACTATCCCTCTGGTCAGATGCTGTGCAGCAGCTATACAAGGAAGTCAGAAGTTGGCCTTACGAATTTCCTCAATCAGTAGATTTCATTCCACCCCATCAAAGGGGAATAGTTTTGGGAAGATTACTAGTCCAAGATAGGTACTTCAGAGGAGGTAGACTTCTATATGCTAACAATGCTTATGTTGGTCTAGCTTTGCCTGGTGATGAAGGATCATGGCAGATAGAAAGCAAGGGCTATCAATTCTGGACTCAAGCTGATACAAAGGGTTTCTTCCTAATAAATAATATTGTGCCTGGTGACTATAATTTGTATGCATGGGTTCCTGGTTTCATTGGTGATTACAGATATAATGCTACAATCACGATCACACCAGGTGGAGTCATCAAATTGGATTCACTTGTGTATGTTCCTCCAAGAAGTGGACCAACCATATGGGAAATTGGGTTTCCAGATCGCACAGCAGCAGAATTCTATGTACCAGATCCTTACCCTACGCTCATGAACAAATTATACAACGAACAGCGCAGAGACAAGTTTAGGCAATACGGACTGTGGGAACGTTACACTGATTTATATCCAAATGAAGATCTTGTTTACACTGTTGGTGTTAGCAAGCATAGAAAGGATTGGTTTTTTGCTCATGTTACGAGAAGCACAGGAAATAAGACATACCAGCCAACGACATGGCAGATTATATTTGAACATCCAAATCAAATAATAAGAGGAAACTACACATTGCAACTGGCCTTGGCATGCACTGCTGACGCTGACCTTCAGGTTCGGGTCAATGACCCTAGCTCTAATCCACCAGACTTTGCAACGGGGAAAATAGGAGGAGATAGTGCCATAGCAAGGCATGGTGTGCATGGATTGTATAGGCTATTCAGCATTAACGTACCAAGTGAACGTTTTGTGAAAGGAACCAACACCATCTATCTGAGGCAGTCAAGAGCCATGAACCCTTTTCAAGGAGTTATGTATGATTATATCCGTTTAGAACGACCTTCATTAACACTGATTTGA 2076 0.4306 MKEKVVGGRSKRVLFLWWFGMTLRFCFLLGACSQKTTLRRVLRETQAEQSTTSNSGVMLNTNNHQQLVVDNGIVSVTFARPEGYILGMSYNGIDNILEDENEDQDRGYFDVVWNTPGKPSNFQRIFGTNFSVIAADENMVELSFSRTWTSSMNGSSVPMNIDIRYILRSGDSGFYSYAIFDRPEGFPAVEIDQIRIVFKLKKDRFNYMAISDERQRSMPTMRDRETGQILAYPEAVLLTRPINQEFRGEVDDKYQYSCENTVNTVHGWISVDADAPVGFWVITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFAYVNNNASSGDDTLSLWSDAVQQLYKEVRSWPYEFPQSVDFIPPHQRGIVLGRLLVQDRYFRGGRLLYANNAYVGLALPGDEGSWQIESKGYQFWTQADTKGFFLINNIVPGDYNLYAWVPGFIGDYRYNATITITPGGVIKLDSLVYVPPRSGPTIWEIGFPDRTAAEFYVPDPYPTLMNKLYNEQRRDKFRQYGLWERYTDLYPNEDLVYTVGVSKHRKDWFFAHVTRSTGNKTYQPTTWQIIFEHPNQIIRGNYTLQLALACTADADLQVRVNDPSSNPPDFATGKIGGDSAIARHGVHGLYRLFSINVPSERFVKGTNTIYLRQSRAMNPFQGVMYDYIRLERPSLTLI 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01349 691 Gene3D - 51 358 IPR014718 GO:0030246
Pumo1g01349 691 Gene3D - 383 483 - -
Pumo1g01349 691 SUPERFAMILY Galactose mutarotase-like 61 348 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pumo1g01349 691 SUPERFAMILY Galactose-binding domain-like 491 684 IPR008979 -
Pumo1g01349 691 FunFam Rhamnogalacturonate lyase B 381 481 - -
Pumo1g01349 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 59 687 - -
Pumo1g01349 691 Pfam Polysaccharide lyase family 4, domain III 494 683 IPR029411 -
Pumo1g01349 691 CDD RGL4_C 496 684 - -
Pumo1g01349 691 Gene3D - 491 684 - -
Pumo1g01349 691 CDD RGL4_M 384 484 IPR029413 -
Pumo1g01349 691 SUPERFAMILY Starch-binding domain-like 381 484 IPR013784 GO:0030246
Pumo1g01349 691 CDD RGL4_N 58 350 - -
Pumo1g01349 691 Pfam Rhamnogalacturonate lyase family 52 250 IPR010325 -
Pumo1g01349 691 Pfam Polysaccharide lyase family 4, domain II 408 480 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01349 Pumo-Chr1 22278280 22286273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01349 58 687 Polysaccharide Lyase AT1G09890 55.063 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01349 K18195 - gmx:100776664 1298.49