Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01348 ATGGCTTCGACAGGGAAAAGTGGTTTGCTCCTATGGTGTTTAAGGGAGATCAACAGTCCAGACATAACATTTAATCATCCTGAAGTCAAACTGTATTTTGACATTGTCTGGAATGCACCAGGAGGCACTTCGAAACTTTGGGGAATCCAAGGAAGTAGATTTTCTGTTATAGAGTCAAGTGAGAATCAAATAGAGGTTTCGTTTTCCAGAACGTGGGACATGGACGGCTCAAGTCTCCCCTTAAACATAGACAAAAGGTATATTTTACGTAGAGGTAGTTCAGGATTATACATATACGCTATATTTGAGCGTCCTGAAAATTTTCCAGCTCTGGAGATTGATCACATTAGGATCGTTTTCAAGTTACAAAAGGACAGGTTCCACTACATGGCTATAGCAGATGATAGGCAACGAGTCATGCCAACTCCAGAAGATAGATCTATAGGGCAACGCCTTGATTTTGATGAAGCTGTTGATGACAAATACCAATACTCTTGTGAGAACAAAGACAATAAGCTTCATGGGTGGATTAACTTGGACTCCAAGTCCAGTGAATCCGTGGGCTTCTGGATGATAACACCAAGTAATGAGTTTCGTAGTGGTGGCCCAATTAAGCAAGGCCTCACTTCTCATGTCGGGCCTGCCACCCTTAATATACTTCATACCACTCACTACTCGGGGAAGGAGGTAACTATGGCGTTTCAAGAAGGGGAACCCTTCAAGAAAGTTTATGGCCCTGTTTTTGCTTATCTCAACTCGGTTTCTAGTGGCCATGATTCACAAGCTCTCTGGAGTGATGCTGTGCAACAGCTGTCCGAGGAAATCAAAAGTTGGCCCTATGATTTCCCTAAATCAGATGATTTTTTCCTAGCCAGTAAACGCGGAAGAGTTGAAGGAAGATTACTAGTCCAAGACAGGTACTTGCACATTCAAGGAGGGAAATTCGTATATGGTAACAATGCTTATGTTGGTTTGGCTCTGCCTGGAGATGTAGGATCATGGCAAAGACAAAACAAGGGTTACCAATTCTGGACTGAAGCTGACAAAGTAGGCCACTTCACAATTGAAAATATTGTACCAGGGGACTACGATTTATATGCATGGGTTCCTGGCATTTTTGGGGACTATAAATATAACACTACTATCACCATCACACCAGGATGTGTTATCCAATTGGGTTCACTAATATACAATCCTCCAAGAAATGGACCTACCATATGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTCTATGTTCCAGATCCTTATCCCAACCTCATCAACCGATTATACATTGGGAAACCAATACACAAGTTTAGACAATACGGATTATGGCAGCGTTACACTGAGTTATACCCAAATCAGGACCTCGTTTATAATGTTGATGCTAGTGATTATAGTAAAGATTGGTTTTATGCTCAGGTTCCCAGGAACATAGGAAACAACACATTTCATCCAACAACATGGGAGATTAAATTCCATCTCCCATTTGTTATAAGAGGAACCTACACACTGCAGCTTGCATTGGCCTCAGCTACAAGTTCTAACTTAGTGGTTCGGTTCAATAACCCTGTGGCTCGTCCTCCACACTTCTCTACGGGATTAATAGGCAAAGATAATGCCATAGCAAGACATGGAATCCATGGATTGTACTGGCCTTACAGCATTGAAGTACCAAGCTATGTATTGGTGGAAGGAACCAACACCATCTATCTGAGGCAGGCAAAAGGTCTAAGTCCTTTCCAAGGAGTTATGTATGACTATATCCGTTTGGAAAGACCTGAAACTTAG 1797 0.4224 MASTGKSGLLLWCLREINSPDITFNHPEVKLYFDIVWNAPGGTSKLWGIQGSRFSVIESSENQIEVSFSRTWDMDGSSLPLNIDKRYILRRGSSGLYIYAIFERPENFPALEIDHIRIVFKLQKDRFHYMAIADDRQRVMPTPEDRSIGQRLDFDEAVDDKYQYSCENKDNKLHGWINLDSKSSESVGFWMITPSNEFRSGGPIKQGLTSHVGPATLNILHTTHYSGKEVTMAFQEGEPFKKVYGPVFAYLNSVSSGHDSQALWSDAVQQLSEEIKSWPYDFPKSDDFFLASKRGRVEGRLLVQDRYLHIQGGKFVYGNNAYVGLALPGDVGSWQRQNKGYQFWTEADKVGHFTIENIVPGDYDLYAWVPGIFGDYKYNTTITITPGCVIQLGSLIYNPPRNGPTIWEIGIPDRSAAEFYVPDPYPNLINRLYIGKPIHKFRQYGLWQRYTELYPNQDLVYNVDASDYSKDWFYAQVPRNIGNNTFHPTTWEIKFHLPFVIRGTYTLQLALASATSSNLVVRFNNPVARPPHFSTGLIGKDNAIARHGIHGLYWPYSIEVPSYVLVEGTNTIYLRQAKGLSPFQGVMYDYIRLERPET 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01348 598 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 30 597 - -
Pumo1g01348 598 SUPERFAMILY Galactose mutarotase-like 83 255 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pumo1g01348 598 Pfam Polysaccharide lyase family 4, domain III 405 593 IPR029411 -
Pumo1g01348 598 SUPERFAMILY Starch-binding domain-like 290 393 IPR013784 GO:0030246
Pumo1g01348 598 CDD RGL4_M 293 395 IPR029413 -
Pumo1g01348 598 Gene3D - 290 392 - -
Pumo1g01348 598 FunFam Rhamnogalacturonate lyase B 290 392 - -
Pumo1g01348 598 CDD RGL4_N 32 256 - -
Pumo1g01348 598 Pfam Polysaccharide lyase family 4, domain II 319 391 IPR029413 -
Pumo1g01348 598 Gene3D - 41 268 IPR014718 GO:0030246
Pumo1g01348 598 Gene3D - 402 594 - -
Pumo1g01348 598 SUPERFAMILY Galactose-binding domain-like 402 594 IPR008979 -
Pumo1g01348 598 CDD RGL4_C 407 594 - -
Pumo1g01348 598 Pfam Rhamnogalacturonate lyase family 28 158 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01348 Pumo-Chr1 22267203 22272379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01348 32 596 Polysaccharide Lyase AT1G09910 53.253 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01348 K18195 - gmx:100792575 1085.09