Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01346 ATGGTGCCCGTGCCACCACCAGAGGACAACATGCCACCACCACCAACACCAACACCAAAAGACCAAGAACCCACACAGGGCAAAAAAACCACCACCACAACGACGAAGCCAGCGCCGGAACAAAGCATAAAGTGCCCGCGATGCGACTCACCGAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACCCAGCCCAGGCACTTCTGCAAAACGTGCAGAAGGTACTGGACCAACGGTGGGGCCTTGCGTAACGTCCCAATTGGCGGTGGTTGCAGGAAGAACAAAAGGGTCAAACCCTCTTCCTCTTCTTCATCATCGAGATTTTCAACCGAATTCAGCCTTCACGGTCTCAATGTTCCACCCTCCATCGAGTTTAACCTCGGCGCATTACCCTTCCCCTCGAGACTCAACACCAACCACCACCACCACCACCACATTCCAACACCAACAACTGGTTTGTTCAACAACCAGTTTTCCTCTTTCGGAGCAGACGTAAATTCGGTTTCGGCCACAAATGGTTTATCTTTATCTGGTTTCCAACTTGACCCCCCTGCCTCAAACTCTCTCATGGGCCTTGCCAGCGCCGACCTCTGGCCGGCGCTGGGCCGGGCCCAAAGCTCGACACTGTCTGATCCATTAACCAGCGCAATGCAATCTATGCAGCAGCAACCTATGCAACAACCATCAATGAACTTGCATAGCAGCCTTGCTTCCTCAATTGAGTCACTGAGCAGCATCAACCATGACTTGCACCTGAAGATGCAGCAGCAGCGCTTGGCAACGATGATGTACGGTGGGGACAGCCACAACAAAGGTGGTGACGTTTCGCTTAATGGGTTCGAGAATCAGAAGCTGCTGAACCCGGTTATGTTTCAGAACCTCGAGATTTCGAAGCCAGAAGAGAGCTTGCCAGCTGGCAGTTCCGTAGCACAGGGCCCAAGTGGGGAGACAACAGTTTACAGCAGCAACCCCCACCGAATGGTTCTTTGGGAATTCTTCTTTTCCCTCAGTGACTACTACTCCTTCAACAAGCAATGGTGGTGCCAATGGCAACAACAACAACATTAA 1071 0.5201 MVPVPPPEDNMPPPPTPTPKDQEPTQGKKTTTTTTKPAPEQSIKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKRVKPSSSSSSSRFSTEFSLHGLNVPPSIEFNLGALPFPSRLNTNHHHHHHIPTPTTGLFNNQFSSFGADVNSVSATNGLSLSGFQLDPPASNSLMGLASADLWPALGRAQSSTLSDPLTSAMQSMQQQPMQQPSMNLHSSLASSIESLSSINHDLHLKMQQQRLATMMYGGDSHNKGGDVSLNGFENQKLLNPVMFQNLEISKPEESLPAGSSVAQGPSGETTVYSSNPHRMVLWEFFFSLSDYYSFNKQWWCQWQQQQH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01346 356 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 258 IPR045174 GO:0003700|GO:0006355
Pumo1g01346 356 MobiDBLite consensus disorder prediction 1 21 - -
Pumo1g01346 356 MobiDBLite consensus disorder prediction 22 40 - -
Pumo1g01346 356 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Pumo1g01346 356 MobiDBLite consensus disorder prediction 1 43 - -
Pumo1g01346 356 MobiDBLite consensus disorder prediction 89 108 - -
Pumo1g01346 356 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Pumo1g01346 356 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01346 Pumo-Chr1 22243828 22245063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01346 13 297 C2C2-Dof Transcription Factor Family AT5G65590 36.859 7.84e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo1g01346 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01346 - - gmx:102663483 357.836