Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01345 ATGTTGCCACTCCCTCTCTCCTTCACAAAACCTTCACCCCACGCGCTACACGGCGCGTGTATTACATCCACTTCAGAACGACGCCACTCCACTGTTCTCCACAAACGTCCATTCTCAACAACAGAGCGCGTGACTTCACTCACGCGCGTGGTGGTTCGAAACAGAAACCTTAACCAAGTAGTAAGAGTGAGAGACAGAGACAAAGGGTCAAACAAAGCAAGGTCCTCACTCAAAGCTGACTCTCTTCTGAGGTGTAGTTCTTATGTTGGGGCTTTGAGGAGCAATTTTGGGGTGGAACTTTCTACTGAACATCGGATGGTTTTTTGTTCCCGGTTCTTGTGTAAGATATTGGAAGGCTTTGGATTGAACATAAGGAATCAGGTCTTGGGAAAATTAAGTTGCACTTTGGTGACCGGTTGGTCATGGGCTCGAATTTGGAAATGGCCTCTTTGCATATGCAAGAAGAAGGCTGCATACAATTACCTTCTCCCATACCTTCATGAAGTGAGGAGCCTTTGGCACTGGGATCTTGGTTTTGGCATACTCATGGAGACTCAAAATCAATCAGAGCCTACAGGATTAAAAAGGATGCTTCCTCCACCGCCTGGAAAGAAAACTTTTAAGTCATGGAGACCAAATAGATCTATCACTGTCGAGACAAACAATAATTCATCTGATGGTTCATTAAGCCAAAACTACCAGCTGCTGAAGGTCCCAAATTTTATTGGGGGGAAATTTGTAGATTCTCAGGGTTCTGAAATCGTTGATGTTATAAGTCCGGCAACACAAGAAGTTGTATCTCAAGTTCATTTAACCACATATGAAGAGTTTAAAGCTGCAGTTAGTGTAGCCAAGCAAGCTTTTCCTTCATGGAAAAACACTCCTATCACCACTCGTCAACGTATAATGTTTAAACTTCAGGAGCTTATCCGCAGAGATATTGATAAGCTTGCCATGAACATCACCATAGAACAGGGCAAGACATTAAAAGGTGCCCAAAGAGACGTGCTTTATGGTTTAGAAGTGGTGGAGCATGCTTGTGGGATGGCAAACCTGCAAATGGGGGAATTTGTCCCCAATGCCTACAATGGGATTGATACATACTGCATTAGAGAGCCCCTTGGAGTTTGTGCTGGAATATGCCCCTTAAACTTTCCAGCAACGATACCATTGTGGATGTTCCCTATTGCAATTACATGTGGCAACACTTACATTCTCAAGCCATGTGAGAAAAATCCAGGGGTTTCAATGATACTTGCAGCACTAGCAAAAGAAGCTGGTTTGCCAGATGGTGTATTAAATATTGTTCATGGTACCAATGATATTGTTAATTACATATGCGATGATGAAGATATAAAAGCTGTATCGTTCTTTGGTCCAATTACAGCTGGAATATATGCCACAGCTGCTGCTAGAGGGAAACGTGTTCAGTCAAATGCAGGTGGCACAAATCATGTACTTGTAATGCCTGATGCTAGCTTGGATGCTACTTTAGATGCCCTTGTTCCTGCTGGCTTTGGTGCTGCAGGAGAGAGGTGCATGACTTCAAGCATAGCTATTTTTGTTGGAGGTTCAATGCAATGGGAAGAAAACCTAGTGCAGCGTGCCAAACTACTTAGAGTAAATGCAGGAACAGATCCTATTGCAGACATTGGTCCAGTTATTAGCAAAGAGGCAAAGGAGAGGATATGTAGACTAGTTCAGAGCAGTGTTGAAAATGGGGCTAGACTTCTACTTGATGGAAGAGATATTGTGATACCAGGATATGAGAGTGGAAACTTTGTTGGTCCTACTATCTTATGCAATGTTACAACCAGCATGGAATGTTACAAGGAAGAAATTTTTGGACCAGTTCTACTTTGCATGCAGGCTGACAACATAGATGAGGCTATGTCAATAATAAATAAAAATAGATATAGAAATGGAGCTTCTATATTCACCACATCTGGTATAGCTGCTAGGAGGTTCCAGAATGAGGTTGAGGCTGGACTGGTTGGGATCAATGTGCCTGTACCTGTTCCATTACCTTTTTCCTCCAATGGGTCAAAAGCATCTTTTGCTGGTGATAGTTTTTCTGGTATAGTTTGGGCCCTCTTCTTCCTTGTACCTTCCTTAGTCGTCGAGTATGTTTTTGATATTACTTGTCCTTTGTTGAATTGCAGGAAAAGCAGGAGTACAGTTTTATACCCAAATCAAAACAGTGGCACACCAATGGAAGCATTTCCCTAG 2229 0.4266 MLPLPLSFTKPSPHALHGACITSTSERRHSTVLHKRPFSTTERVTSLTRVVVRNRNLNQVVRVRDRDKGSNKARSSLKADSLLRCSSYVGALRSNFGVELSTEHRMVFCSRFLCKILEGFGLNIRNQVLGKLSCTLVTGWSWARIWKWPLCICKKKAAYNYLLPYLHEVRSLWHWDLGFGILMETQNQSEPTGLKRMLPPPPGKKTFKSWRPNRSITVETNNNSSDGSLSQNYQLLKVPNFIGGKFVDSQGSEIVDVISPATQEVVSQVHLTTYEEFKAAVSVAKQAFPSWKNTPITTRQRIMFKLQELIRRDIDKLAMNITIEQGKTLKGAQRDVLYGLEVVEHACGMANLQMGEFVPNAYNGIDTYCIREPLGVCAGICPLNFPATIPLWMFPIAITCGNTYILKPCEKNPGVSMILAALAKEAGLPDGVLNIVHGTNDIVNYICDDEDIKAVSFFGPITAGIYATAAARGKRVQSNAGGTNHVLVMPDASLDATLDALVPAGFGAAGERCMTSSIAIFVGGSMQWEENLVQRAKLLRVNAGTDPIADIGPVISKEAKERICRLVQSSVENGARLLLDGRDIVIPGYESGNFVGPTILCNVTTSMECYKEEIFGPVLLCMQADNIDEAMSIINKNRYRNGASIFTTSGIAARRFQNEVEAGLVGINVPVPVPLPFSSNGSKASFAGDSFSGIVWALFFLVPSLVVEYVFDITCPLLNCRKSRSTVLYPNQNSGTPMEAFP 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01345 742 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 204 694 IPR010061 GO:0004491
Pumo1g01345 742 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 242 487 - -
Pumo1g01345 742 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 239 690 IPR010061 GO:0004491
Pumo1g01345 742 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 242 688 IPR016162 GO:0016491
Pumo1g01345 742 CDD ALDH_F6_MMSDH 238 689 IPR010061 GO:0004491
Pumo1g01345 742 SUPERFAMILY ALDH-like 233 706 IPR016161 GO:0016491
Pumo1g01345 742 Pfam Aldehyde dehydrogenase family 246 690 IPR015590 GO:0016491
Pumo1g01345 742 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 481 681 - -
Pumo1g01345 742 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 481 680 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01345 Pumo-Chr1 22217564 22227287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01345 237 689 Aldehyde Dehydrogenase Gene Family AT2G14170 73.026 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01345 K00140 - gmx:100796803 924.08