Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01343 ATGATAGAGTGTGCTTCTGCGATAGAACTTAGAAGGATTGATTGTGTTGCTAGCACTTATTCTGTGATAAAATTGTTATATTTGGCTTCCTCGTACAAAACGAAAGGGAAGAAAAACAAGGAGATCGGAGTTCTCGTTGTAAGCTTCGATAATGTCGGTCGCTCTCGTTTTAGTTTCGTTATTAACGATGCATTCACTTGCTTGTATAAGTTGCAACATAGGTTGTCGCACCAAATTGAATCAACGTGTTTTCTTACTACTGACTTGGTCCTGTTTCATCGAGTTGAGTCAATGTCTTCTTCTTCTTCATCATCTTCAAAATCAAAATCCCAATGGGAATACGATGTGTTCATCAATTTCTGTGGGGAAGATACTCGTGAGAACTTCGTGTCTCATCTGTATTCCGCCCTTGCAAATGCTAGAGTCAACACTTTCCTCGACGACAAGAAGCTTCCCAAGGGACAAGAGCTGAGATCAGAACTGTTCCGCGCCATAGAAGGGTCTCAAATATCCATCGTTGTGTTTTCCCAAAACTACATTCTCTCTTCTTGGTGTCTCGATGAACTGGTCAAAATCATGGAATGCCATGCACTTAGAGGTCAGGTTGTATTGCCCCTTTTTTGCGGTATTTACCCGTCGTTTTTACGTAACCTGCAAGATGTTTCTTTTGAAGAATTTTATGGAAAAGATAGGGACCACCATCGGATAGAACAATGGAAGCAAGCCCTGGCCCAAGCAGCAAATGTAGCAGGTTGGGATGTGAGAAATTACAGAAATGAAAACGAGGTTGTGAAGGAAACTGTTAGTGAAGTTTTGAAAAGACTAGATAAAACATACTTGTCTATCACGGACTTTCCAGTTGGACTAGAATCTCGTGTGCAATATGGTATTGGCTTTCTAAGAAAGCAAACAAGAGGAGCTTGTATATTAGGGATTTTGGGAATGGGGGGAATTGGTAAAACAACCATAGCCAAAGCCATTTACAATGAAATTCGTCATGAATTTCAAGATAAAAGTTTCCTTGCAAATATTAGAGAAGTTTGGGAAAAAGATAGGGGCCCGATTGATTTACAAGAACAACTTCTTTCAGATATCCTTAAAACACAAAAGATGAAGGTGCATAGCATTGATTGGGGAAAAGCTATGATCAAGGAAAGGCTTTGCACAAAAAGAGTACTTGTTGTACTTGATGATGTGACTAAGTTTGAGCAATTAAATGCATTATGTGGAGATCGTAATGGGATTGGTCGAGGAAGTGTAATAATCATTACAACCAGAGATGTACGTCTACTCAACGTGCTTGAAGTTGACTATGTACATGAAGTGAAGGAAATGAATGAAAGTGAGTCCCTTGAGCTTTTTAGTTGGCATGCTTTTAGGAAAGCAAATCCAATAGAAGACTTCCTTGATCTCTCAAAACAAGTAGTCACATACTGTGGAGGGCTACCTCTAGCTCTTGAAGTTCTTGGATCTTACTTGTACAAGAGAAGAAAAGAAGAATGGCAAAGTGTATTGTCAAAACTGAAAGAAATTCCCAATGATCAAATACAAGAGAAATTAAAAATAAGCTATGATGGTTTAACAGATCATATGGAGAAGGACATATTTCTTGACATATGCTGCTTCTTTATCGGCAAGGACAGAGCCTATGTCACAGAGATACTAAATGGTTGTGGACTTCATGCTGAAATTGGAATAACAGTCCTGGTAGAAAGGAGCCTCATAAAAGTTGAAAAGAATAACAAACTCGGAATTCATGATTTGCTACGTGACATGGGAAGAGAAATTGTTCGTCAAAGTTCACCACTAGAACCACAAAAGCGCAGTCGATTGTGGGTTCATGATGATGTACTTGATATATTGACCGAAAATACTGGAACAACAGCCATTGAGGGATTGGCTTTGAAGTTGCAAAGAATTAACAGAGTTTGGTTCAATACCAAAACATTTGAGAAAATGAAAAGACTGAGACTTTTGCAACTTGATAACGTCCAACTTGATGGAGATTATAGGCATCTTCCCAAACAGCTGAGATGGGTCTATTGGCAAGGATTTTCATTAAAATACATACCTGATGGCTTTTATCAGGGAAATGTAGTTGCTATTGACTTAAAACACAGTTATCTTAAACTAGTATGGAAGGAGCCCCAGTTGTTGGAAAGGCTGAAATTCCTCAATCTTAGTCATTCCAAATACTTATTAAAGACCCCTGATTTTTCAAAACTACCAAATCTTGAGAGGCTCATTCTCAAAGATTGTCCAAGCTTGTATGAGGTACACCATTCAATTGGAGATCTAAGTAATCTTCTTCTGCTAAATTTGAAGGATTGTAGATGCCTTCGCATTCTCCCAATGAGAATCTATAAGTTGAAGTCTTTAAAAACACTCATTTTTTCTGGTTGTTCAAAGATTGACAAGTTAGAAGAAGACATAGTGCAGATGGAATCCTTAACAACTCTAATTGCAGACAATACTAGTCTAAAACAGGTGCCCTTTTCTATAGTAAGATCCAAAAAGATTGGATATATATCGCTTTGTGGATATGAAGGATTAGCACGTGATGTATTTCCTTCTCTCATATTGTCTTGGATGTCACCAACAGGAGGTCTTATATCCTGTGTTCAGTCATTTTGGAGCACGTCAACATCTATAGTCTCCGTGGATACACAGGATCATAATTTGGGTAACCTATTATCAAAGCTTAGTGAATTTTCAAAACTTCGAAGTATTTGTGTGCAATGTGACTCAGATTTTCAGCTAACTCAAGAATTAAGAATAATTCTGGATGACTTATGCAATGTAAATTTTGCTGAATTGGAAACTACATATGCATCACAAATTTCAGAAAATTCTACAGTATCTCAGATTGCAATGGGAAGTTACCACCAAGTCATCGATATGCTTAATAATAGTATATATGAGGGCTTGACAACCTATATTTCTGGTGATTTTCTCCTTCCAGGGGACAATTATCCTTATTGGTTAGCCTATACAGGGAAAGGATGTTCAGTACCCTTTCAAGTGCCTGATGATAGTGATTGTCGCATGAAGGGAATGATTATGTGTGTTGTTCATTCACCAACCCCTGAAAACATGGCAACTGAAAGTCTTACTAGTGTCTTTATCTTTAATTACACAAAGTGCATCATTCAGATATACAAGCCAACAACAACAATGTCCTTTACAAATGAAGATTGGCAGCGCGTCATATTAAGTCTAGGACCTGGTGACAATGTGGAGATTTTCGTAGCTTTAGGGCATGGAATGACTGTTAAGAAGACAGCTGTCTATCTAATATATGGTCAGTCAACTACAATGAGAACGGAGCCATCATCTAATGTGGAAATGGAACCGTCACCTGATGTGGAAATGGAGCCATCACCTGATGCAATGGAGCCATCAAAGAAGCCAAAGAAAAATATCTCTAGAAAAATTACAAAGATAATGAGAGTATGTTTATGCTTGAACTAG 3471 0.3803 MIECASAIELRRIDCVASTYSVIKLLYLASSYKTKGKKNKEIGVLVVSFDNVGRSRFSFVINDAFTCLYKLQHRLSHQIESTCFLTTDLVLFHRVESMSSSSSSSSKSKSQWEYDVFINFCGEDTRENFVSHLYSALANARVNTFLDDKKLPKGQELRSELFRAIEGSQISIVVFSQNYILSSWCLDELVKIMECHALRGQVVLPLFCGIYPSFLRNLQDVSFEEFYGKDRDHHRIEQWKQALAQAANVAGWDVRNYRNENEVVKETVSEVLKRLDKTYLSITDFPVGLESRVQYGIGFLRKQTRGACILGILGMGGIGKTTIAKAIYNEIRHEFQDKSFLANIREVWEKDRGPIDLQEQLLSDILKTQKMKVHSIDWGKAMIKERLCTKRVLVVLDDVTKFEQLNALCGDRNGIGRGSVIIITTRDVRLLNVLEVDYVHEVKEMNESESLELFSWHAFRKANPIEDFLDLSKQVVTYCGGLPLALEVLGSYLYKRRKEEWQSVLSKLKEIPNDQIQEKLKISYDGLTDHMEKDIFLDICCFFIGKDRAYVTEILNGCGLHAEIGITVLVERSLIKVEKNNKLGIHDLLRDMGREIVRQSSPLEPQKRSRLWVHDDVLDILTENTGTTAIEGLALKLQRINRVWFNTKTFEKMKRLRLLQLDNVQLDGDYRHLPKQLRWVYWQGFSLKYIPDGFYQGNVVAIDLKHSYLKLVWKEPQLLERLKFLNLSHSKYLLKTPDFSKLPNLERLILKDCPSLYEVHHSIGDLSNLLLLNLKDCRCLRILPMRIYKLKSLKTLIFSGCSKIDKLEEDIVQMESLTTLIADNTSLKQVPFSIVRSKKIGYISLCGYEGLARDVFPSLILSWMSPTGGLISCVQSFWSTSTSIVSVDTQDHNLGNLLSKLSEFSKLRSICVQCDSDFQLTQELRIILDDLCNVNFAELETTYASQISENSTVSQIAMGSYHQVIDMLNNSIYEGLTTYISGDFLLPGDNYPYWLAYTGKGCSVPFQVPDDSDCRMKGMIMCVVHSPTPENMATESLTSVFIFNYTKCIIQIYKPTTTMSFTNEDWQRVILSLGPGDNVEIFVALGHGMTVKKTAVYLIYGQSTTMRTEPSSNVEMEPSPDVEMEPSPDAMEPSKKPKKNISRKITKIMRVCLCLN 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01343 1156 Coils Coil 254 274 - -
Pumo1g01343 1156 FunFam Disease resistance protein (TIR-NBS-LRR class) 446 528 - -
Pumo1g01343 1156 SUPERFAMILY Toll/Interleukin receptor TIR domain 103 252 IPR035897 -
Pumo1g01343 1156 Gene3D Ribonuclease Inhibitor 615 978 IPR032675 -
Pumo1g01343 1156 PRINTS Disease resistance protein signature 309 324 - -
Pumo1g01343 1156 PRINTS Disease resistance protein signature 386 400 - -
Pumo1g01343 1156 PRINTS Disease resistance protein signature 479 493 - -
Pumo1g01343 1156 PRINTS Disease resistance protein signature 788 804 - -
Pumo1g01343 1156 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 114 825 IPR044974 GO:0006952
Pumo1g01343 1156 FunFam Disease resistance protein (TIR-NBS-LRR class) 110 277 - -
Pumo1g01343 1156 Gene3D - 444 528 IPR042197 -
Pumo1g01343 1156 SMART till_3 113 249 IPR000157 GO:0007165
Pumo1g01343 1156 Pfam NB-ARC domain 299 525 IPR002182 GO:0043531
Pumo1g01343 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 539 IPR027417 -
Pumo1g01343 1156 SUPERFAMILY "Winged helix" DNA-binding domain 514 621 IPR036390 -
Pumo1g01343 1156 Pfam TIR domain 114 284 IPR000157 GO:0007165
Pumo1g01343 1156 ProSiteProfiles TIR domain profile. 112 275 IPR000157 GO:0007165
Pumo1g01343 1156 SUPERFAMILY L domain-like 600 915 - -
Pumo1g01343 1156 Gene3D - 279 439 IPR027417 -
Pumo1g01343 1156 MobiDBLite consensus disorder prediction 1108 1140 - -
Pumo1g01343 1156 Gene3D - 107 278 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01343 Pumo-Chr1 22207036 22212781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01343 110 834 WRKY Transcription Factor Family AT4G12020 30.831 7.95e-82 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01343 - - vun:114165127 1596.64