Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01333 ATGTGTTTGGGGTTCCAATTTCGGGGACGGATTCGGACAGCACGGGAGAGCAGCAACGACGGTGGGCCGGGGTCGCCGGGCCTGGGCCCGAATCGGGCGGCCCAAGCGCAGAACCAGCAGTGGAGGGCGATGATCGACGTGCTGAGGTTCAAGTCCGTTAGGAGATTCTCGACGATTCCGCTGCTGGCGGCGAGCTACGAGATCTCGCGGAGGAGCCTGAGGAACAAGCTGGCGCGGATTCGACCCGCGAATGAAGACGACGACGATTTGGATGGCGCTTTGGATATTGACGGAATTCCGACCAAGCCTTCTTGGAGGAACTTCAGCCACGATGAACTCGCCGCTGCAACCGACGATTTCAGCCCTGAGAACATGATTGGAAAAGGTGGTCATGCTGAAGTCTACAAAGGATGCTTACCAGATGGTCAAGTTGTAGCAGTGAAGAGGCTTATGAGGAACGAAAAGGATGCTGAGGACAGAGCAGGTGATTTCTTGTCAGAGCTTGGAATCATTGCTCACATTAACCACCCCAATGCAACACGCTTGATTGGGTTTGGAATCGACCAGGGTCTCTACTTTGTTCTACAATTGGCCCCACATGGCAGCCTTTCCTCTTTGCTCTTTGGTTCTGAATGTCTAGAGTGGAAGATAAGGTTTAAAGTTGCTGTTGGGGTAGCAAAAGGATTGCAGTATCTCCATCACGATTGCCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAACATATTACTCAACCTAAATGATGAAGCTGAGATTTCAGATTTTGGATTGGCAAAGTGGCTCCCAGATAAGTGGGCCCACCATGTTGTCTTCCCAATAGAAGGCACGTTCGGGTATTTGGCTCCAGAGTACTTTATGCATGGAATTGTGGATGAGAAGACTGATGTTTTTGCATTTGGGGTTTTGTTACTGGAGCTCATAACAGGTCGTCGTGCAGTTGATTCAAATAGTAGGGAAAGTCTTGTGATCTGGGCCAAACCACTGCTGGATGCAAGGTTGATCAATGAAATGGTAGACCCCAGATTAGAAGAGAAATATGATCTCACAGAAATGAAGTGTGCCATGGCAACAGCTTCCTTGTGTATCCATCACATGTCCTCTAAGAGGCCATACATGAATCAGGTTGTGCAGCTACTGAAAGGTGAAGAGGTGCCTATTGAAATCAATCAAAATTCATCAGCTCCAAGATCACTCTTGATAGATGCATGTGACCTGGAAGATTATACTTGCTCTAATTATTTGAATGACCTCAATCGCCACAAGCAATTACTCATGGAGTGA 1305 0.482 MCLGFQFRGRIRTARESSNDGGPGSPGLGPNRAAQAQNQQWRAMIDVLRFKSVRRFSTIPLLAASYEISRRSLRNKLARIRPANEDDDDLDGALDIDGIPTKPSWRNFSHDELAAATDDFSPENMIGKGGHAEVYKGCLPDGQVVAVKRLMRNEKDAEDRAGDFLSELGIIAHINHPNATRLIGFGIDQGLYFVLQLAPHGSLSSLLFGSECLEWKIRFKVAVGVAKGLQYLHHDCPRRIIHRDIKASNILLNLNDEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLDARLINEMVDPRLEEKYDLTEMKCAMATASLCIHHMSSKRPYMNQVVQLLKGEEVPIEINQNSSAPRSLLIDACDLEDYTCSNYLNDLNRHKQLLME 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01333 434 PANTHER OS08G0249100 PROTEIN 34 400 IPR046958 -
Pumo1g01333 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Pumo1g01333 434 MobiDBLite consensus disorder prediction 13 36 - -
Pumo1g01333 434 ProSitePatterns Protein kinases ATP-binding region signature. 126 148 IPR017441 GO:0005524
Pumo1g01333 434 Gene3D Transferase(Phosphotransferase) domain 1 199 402 - -
Pumo1g01333 434 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 95 197 - -
Pumo1g01333 434 Coils Coil 422 434 - -
Pumo1g01333 434 SMART serkin_6 120 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01333 434 ProSiteProfiles Protein kinase domain profile. 120 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01333 434 SUPERFAMILY Protein kinase-like (PK-like) 104 395 IPR011009 -
Pumo1g01333 434 Gene3D Phosphorylase Kinase; domain 1 97 195 - -
Pumo1g01333 434 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 199 401 - -
Pumo1g01333 434 Pfam Protein kinase domain 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01333 Pumo-Chr1 22047356 22052070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01333 83 410 Trihelix Transcription Factor Family AT5G38560 40.413 1.41e-68 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pumo1g01333 Pkinase 4.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01333 - - gmx:100794225 747.658