Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01329 ATGGAATTCCCATCCATGCTCTATTGTCATTCTTCATTTGGAAAACTCCCTGCAAAAGGCGCTTGTGAAAAGACACTGGAACGTATCAGGAAATATGAGGAAAGGATAATTGAGAAGCTGCTTTCCAAGTATATAGCTTTATGTGACAATGTGCCAGCTGAAACACTTGAAGTTGAGAAATTTGATGAACCAATGCAAAAGCGCACCATAGACTTGATCCATGGTCTAGGAATAACGAAATTGATCATGGGATTTTCATTCATGAAGCCTTCCTTGAAATCGGAAGTTGACATTAACGGATTGTTCTACGTTCATCAGCACAAGCCACCCTTCTGTGAGTTGTTCATTATATGTGGAGGGAAACAAGTTACACCTCGAGTGAAGAATGATGAGATAATCATGGAGGATGATAATGGGGTCAAGATTGCCAGCACGAGAGATAAGATGAATTGTATAGATTGGCTAGAGAGAATGTTCTTTGTTGATAAAACCATTGACACCCAACATAGAAGTTCTTGCGCACCATCATCCTCAACAAATTTGGAGCCATATCTTAACCAAAACGAATGGGAATTTAGTTTCCAAGAAATTGAAAATTATTTGCAGGAGTTACTGTCTTCAAATTTGGAGGAAGGAAGTTCTGGGCAAGACAACCATGTTTCCCACATTAACCCAATTGAGCCATATGTCAAAGAACGTAACATGTACAATTCGGATAACACGTGTGCTGCAGAAAATATTGAGATCCTCAAAGATAAACTGAATGAAGCTTACAGAACCATCCAAATGAAAAGGAAAGAAGACGAAACCAATTGGGAGAGACATGAAAAAGCTGAAAGGGCTATTTATTTATGTAACCGTCGGGAAGAAGAACTTGAATCTCTAATAAAGGAAGAAGTGACAAGAAAGGAAGAACTAAAGAAGGAACTCAATGCAGAAAAAGAGCAACTTCACGAAATTAGAATGGATATTGAAGAGAGCAAGAAAAGGCTTAGTTTAGTGGTAGAGCAGCAATCAGAGCTCCTAAACAGGCTTCATATTTGCACATTGGCAGTGTCACAAGCTGAAACCAAACTAGGGAAGGCATTGGCTGAAAAGACAGAGATGCTTATGGAGATGGATGATCTAAGGAAACAAAGGAATGCACTGAATAGAAGCATTGAGTTTTTCCAGAGAAAAAAATGCCACAGGAATGAGTGTAGGGTGATAGAGAAGGGTTGTGGTTTTAAGGAGTACACAAAGGAGGAGATCATCTTAGCCACCCACAATTTTTCGGAGCAGATGAGGTTGAAATCAGGTGAGAATTGGACCAATGTGTATAGAGGACAAATTAACCATTCCACTGTTGCAATCAAGATACTCAATTCTGTTCCTGACTTGCCCCAACTAGATTTCCAAGCCAAGGTGAGGAATCTTGGTAAAATTCGGCAACCTTATCTAGTTGCTATGTTGGGCTTCTGCTCTGAGCCCAAATGCTTAGTATTGGAATACATGCACAATGGCAGCTTGGAAGAAATGCTATTTTGCAAGAGCAGAAACCGGGCCTTAAGCTGGCGTGATTGCATACGGATAGCCATTGAAGTTTGCTCGGGGCTGGGCTTTCTAAACGCAGCTCAGCCCAAGCCCATCATTCATTGCCTTCCTTCTCCGTCCAAAATCCTTATAGATTGCAATCTTGTTGCAAAAATCACAGGCTTTGGGCTTCATGGGTGCAATGAAGTGTGTAATGATAATTCTTCAGATATGAAGGCAATAGGGGTTTTATTGCAAAATCTATTGACTGGGAGAAGAAATTTGGTGGCAATGGATATAGAGGCTTTTTTTGATGAGAAATGGCCATTGGATGTGGCAAGAGATGTTGTGGGCTTAGCAATGCGGTGCATGTCCATGAACTGTGAGTCCAATGGAGAAATGAGCATAACAAGAGTCATGGAGGAACTCAATGAGATCAGAAGAAAGGGTGATGAAATGCTTGCTAGGGAAGAATGGAGGATTATCAATGGTGGAGATGTAGATGGACACGATTCCACCCACGTGCCTAGTATTTTCGTTTGCCCTATCCTTCAGAAGATAATGAAAAATCCGCATATAGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAAGAGTGGTTGCAATCTGGGCATGACATATCACCCAAAAACTTGAAGCTGAAGCACAAATTACTTGCCCCTAATCATACCCTCCGTTCCCTAATTGAGGACTGGCAAGGCAAGAGATCAGCTAAAGATGCAAAATAA 2265 0.4093 MEFPSMLYCHSSFGKLPAKGACEKTLERIRKYEERIIEKLLSKYIALCDNVPAETLEVEKFDEPMQKRTIDLIHGLGITKLIMGFSFMKPSLKSEVDINGLFYVHQHKPPFCELFIICGGKQVTPRVKNDEIIMEDDNGVKIASTRDKMNCIDWLERMFFVDKTIDTQHRSSCAPSSSTNLEPYLNQNEWEFSFQEIENYLQELLSSNLEEGSSGQDNHVSHINPIEPYVKERNMYNSDNTCAAENIEILKDKLNEAYRTIQMKRKEDETNWERHEKAERAIYLCNRREEELESLIKEEVTRKEELKKELNAEKEQLHEIRMDIEESKKRLSLVVEQQSELLNRLHICTLAVSQAETKLGKALAEKTEMLMEMDDLRKQRNALNRSIEFFQRKKCHRNECRVIEKGCGFKEYTKEEIILATHNFSEQMRLKSGENWTNVYRGQINHSTVAIKILNSVPDLPQLDFQAKVRNLGKIRQPYLVAMLGFCSEPKCLVLEYMHNGSLEEMLFCKSRNRALSWRDCIRIAIEVCSGLGFLNAAQPKPIIHCLPSPSKILIDCNLVAKITGFGLHGCNEVCNDNSSDMKAIGVLLQNLLTGRRNLVAMDIEAFFDEKWPLDVARDVVGLAMRCMSMNCESNGEMSITRVMEELNEIRRKGDEMLAREEWRIINGGDVDGHDSTHVPSIFVCPILQKIMKNPHIAADGFSYELEAIEEWLQSGHDISPKNLKLKHKLLAPNHTLRSLIEDWQGKRSAKDAK 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01329 754 CDD RING-Ubox_WDSUB1-like 680 721 - -
Pumo1g01329 754 PANTHER OS02G0152300 PROTEIN 28 742 - -
Pumo1g01329 754 Gene3D Phosphorylase Kinase; domain 1 409 497 - -
Pumo1g01329 754 Gene3D Transferase(Phosphotransferase) domain 1 498 666 - -
Pumo1g01329 754 SUPERFAMILY Protein kinase-like (PK-like) 409 634 IPR011009 -
Pumo1g01329 754 ProSiteProfiles U-box domain profile. 678 751 IPR003613 GO:0004842|GO:0016567
Pumo1g01329 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 753 IPR013083 -
Pumo1g01329 754 Coils Coil 289 330 - -
Pumo1g01329 754 SUPERFAMILY RING/U-box 675 749 - -
Pumo1g01329 754 Coils Coil 247 267 - -
Pumo1g01329 754 Pfam Protein tyrosine and serine/threonine kinase 435 569 IPR001245 GO:0004672|GO:0006468
Pumo1g01329 754 ProSiteProfiles Protein kinase domain profile. 425 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01329 754 Pfam U-box domain 679 747 IPR003613 GO:0004842|GO:0016567
Pumo1g01329 754 SMART Ubox_2 682 744 IPR003613 GO:0004842|GO:0016567
Pumo1g01329 754 Coils Coil 359 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01329 Pumo-Chr1 22011704 22016027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01329 8 751 U-box Gene Family AT5G65500 42.428 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pumo1g01329 PK_Tyr_Ser-Thr 4.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01329 - - gmx:100795815 1290.02