Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01314 ATGGAAGAGAGCATTGACACTGCAACCTCAAGCCTTCTTTGTCTGGAAAACAGTGACACGTGCTTTGATGAGTTTGATTGTAGTGTTGCAGATGAGTCTCCTTCCTGGGACCACAAAAACCTTAACTTTAACAATCAGTGTCTGATTAAGGAGAATCATGGATCGGAACATGTGTTGGATTTTTCTGTACAGAGTGATGAAACTGTTTTGGATTTGGTTGGGAGGGAGAAGGAACATTTGCCCCGGGATGATTATCTCAAGAGGCTGCTTGGTGGGGACTTGGACTTGAATGTTAGGAAGGAGGCTCTTGATTGGATTTGGAAGGCTCATGCATACTATGATTTTGGACCCTGTAGCTTATGTCTATCTGTGAACTACTTGGATCGGTTCCTATCAGTATACGAATTACCAAGAGGCAAAAGTTGGAGTGTGCAACTGTTAGCTGTAGCATGTTTGTCAATTGCTGCCAAAATGGAGGAGATTAAAGTGCCTCCTATTGTAGATTTACAGGTTGGAGAACCTAAGTTTGTATTTGAAGCTAAATCCATTCAAAGAATGGAACTACTGGTATTAAGCACATTGAGATGGAAAATGCAAGCTTTAACTCCATTTTCCTTCCTAGATTACTTCCTCAGGAAGATCACTTGTGACCAAGTTCTAGTAAAATCATCCATTTTGAGATCAGTAGGGCCCATGCTTAACATAATTAGATGTATCAATTTCTTGGAATTCAGGCCTTCTGAAATTGCTGCTGCAGTGGCAATTTCTGTATCAAGGGAAATGCAAGCAGAAGAGATTGACATGGCCTTAGCATGTGTCATTGTAGAGAAGGAAAGAATTTTGAAGTGTCTTGAATTGATTAGAGATTTGTCCTTGATCCAAGATTCTGCTAATTTGGGCAGCAACTTAGCAGCATTATTTGTACCCCAAAGCCCTATTGGGGTGCTGGATGCTGCATGCTTGAGCTCTATAAGTGATGAATTAACAGTTGGATCATATAGAGATTCTTCCCATAATACTCCAAATTCTAAGAGGAGGAAATTTGACTAA 1050 0.4038 MEESIDTATSSLLCLENSDTCFDEFDCSVADESPSWDHKNLNFNNQCLIKENHGSEHVLDFSVQSDETVLDLVGREKEHLPRDDYLKRLLGGDLDLNVRKEALDWIWKAHAYYDFGPCSLCLSVNYLDRFLSVYELPRGKSWSVQLLAVACLSIAAKMEEIKVPPIVDLQVGEPKFVFEAKSIQRMELLVLSTLRWKMQALTPFSFLDYFLRKITCDQVLVKSSILRSVGPMLNIIRCINFLEFRPSEIAAAVAISVSREMQAEEIDMALACVIVEKERILKCLELIRDLSLIQDSANLGSNLAALFVPQSPIGVLDAACLSSISDELTVGSYRDSSHNTPNSKRRKFD 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01314 349 Gene3D - 82 199 - -
Pumo1g01314 349 FunFam D2/4-type cyclin 82 195 - -
Pumo1g01314 349 CDD CYCLIN_AtCycD-like_rpt1 98 196 - -
Pumo1g01314 349 SMART cyclin_7 104 192 IPR013763 -
Pumo1g01314 349 FunFam D6-type cyclin 196 285 - -
Pumo1g01314 349 ProSitePatterns Cyclins signature. 99 130 IPR006671 -
Pumo1g01314 349 PANTHER CYCLINS 72 288 IPR039361 -
Pumo1g01314 349 Pfam Cyclin, N-terminal domain 75 198 IPR006671 -
Pumo1g01314 349 Gene3D - 72 285 - -
Pumo1g01314 349 SUPERFAMILY Cyclin-like 57 198 IPR036915 -
Pumo1g01314 349 CDD CYCLIN_AtCycD-like_rpt2 202 287 - -
Pumo1g01314 349 SMART Cyclin_C_2 201 324 IPR004367 -
Pumo1g01314 349 Pfam Cyclin, C-terminal domain 202 294 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01314 Pumo-Chr1 21881276 21883745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01314 64 267 Core Cell Cycle Gene Families AT5G65420 59.223 5.14e-85 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01314 K18810 - gmx:100800570 579.326