Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01312 ATGGAGTTCGAGGAGCAAGTGGAAGCTGAGTTGGGGATGCAGCAAGCAGCGAGTTACGACGAGGAGGAGCCCGTGGTGGCGGCGGTGCCGGTGACTCCACCACCCGTCGCCACCATGGCGCCCCGTAACAGTGGCAAGGGGAAGTACAAGGAGTGCCTCAAGAACCACGCCGTCGGAATCGGCGGCCACGCGCTCGACGGCTGCAACGAGTTCCTCGCGGCGGGCGTGGAGGGCACGCTCGACGCGCTGAAATGCGCGGCGTGCGACTGCCACCGCAACTTCCACCGCAAGGAGAGCTCCGAGAGCTTCCTGCTGCCCTACCACCACCGCAGCCACCCCCCGCCGCCGCCCCCGCCCCCGCCCCCGCCGCCGTTCGCGGCGTACTACCGGGGCCCAGCGGGGTACCTCCACGTGGCGGGGCAGCAGCGCGCCACGCTGGCGCTCCCGTCCACGTCAGGTGCGGGCGGCAGTGGTGGTGGGGCCCAGAGCCCGAGGGAGGACCAGGAGGATCATGTCTCGGACCCAATAAGTGTTGGTGCTGCTCATGCCGGTTCCAACAACAACATCAACAAGAAGAGGTTCCGAACCAAGTTCACTCAGGAACAGAAGGACAAGATGCTCGCTTTCGCCGAGAAACTAGGTTGGAGGATTCAGAAGCACGACGAGAGCGTCGTGCAGGAGTTCTGCTCCGAAACTGGCGTTCAGCGCCACGTCCTTAAGGTTTGGATGCACAATAACAAGCACACCCTTGGTAAGAAGCCCTAG 765 0.6444 MEFEEQVEAELGMQQAASYDEEEPVVAAVPVTPPPVATMAPRNSGKGKYKECLKNHAVGIGGHALDGCNEFLAAGVEGTLDALKCAACDCHRNFHRKESSESFLLPYHHRSHPPPPPPPPPPPPFAAYYRGPAGYLHVAGQQRATLALPSTSGAGGSGGGAQSPREDQEDHVSDPISVGAAHAGSNNNINKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDESVVQEFCSETGVQRHVLKVWMHNNKHTLGKKP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01312 254 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 48 98 IPR006456 -
Pumo1g01312 254 SUPERFAMILY Formin homology 2 domain (FH2 domain) 114 124 - -
Pumo1g01312 254 SUPERFAMILY Homeodomain-like 183 252 IPR009057 -
Pumo1g01312 254 Pfam ZF-HD protein dimerisation region 48 99 IPR006456 -
Pumo1g01312 254 MobiDBLite consensus disorder prediction 106 128 - -
Pumo1g01312 254 MobiDBLite consensus disorder prediction 109 128 - -
Pumo1g01312 254 Gene3D - 177 252 - -
Pumo1g01312 254 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 49 98 IPR006456 -
Pumo1g01312 254 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 250 - -
Pumo1g01312 254 NCBIfam homeobox domain, ZF-HD class 191 247 IPR006455 -
Pumo1g01312 254 FunFam Zinc-finger homeodomain protein 2 179 252 - -
Pumo1g01312 254 MobiDBLite consensus disorder prediction 148 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01312 Pumo-Chr1 21842943 21844069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01312 46 250 ZF-HD Transcription Factor Family AT4G24660 50.732 3.54e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo1g01312 ZF-HD_dimer 7.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01312 - - gmx:100798992 316.235