Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01307 ATGGAAGAAGCATTGCGTCATCTCAACGGAATGGCCCCCACTCAAGAACCCGCAGTCATCTACGACCACCACCACCCCAAGAAGTGTGCCACCAAGCGAGCTCTGCGCGACACCGCCAACTCCGGCACCGCCGCCATGCGCTACCGCGGGGTCCGGCGCCGCCCCTGGGGCCGCTACGCCGCCGAGATCCGCGACCCGCAGTCGAAGGAGCGGCGCTGGCTCGGCACCTTCGACACGGCGGAGGAGGCCGCCTGCGCCTACGACTGCGCCGCCCGAGCCATGCGCGGCGCCAAGGCCCGAACCAACTTCGTCTACCCCGACGCCGCCGACCCCCACCTCTTCGAACCCTACAACATCCCCAAACACTGCCACGTCACCACCAGGTTCGTCCCGAACCAAAATTTAAGTGGTGACTTCTCTGCAACTGCAAGTGCCCACAACAACAACAACGCTTCTTCTTCTTCTCTCAACATGCTTCTCTGTCGTGACTTTCTCAACTCTTCTTCTCACCACTTTCATAATAATAATAATAATAAGTTTGCTAGTGGTTATGTAAACTCTTCATCTTTATCTTCTTCTTCTGCTGCGACTAACTGTCTCCAAGGTTGCTGCGTTACCAACGCTAATAATGCTAACACTCTTAATCTTGGAACGGAAGTTGCTGAAGCTATTGATGAAGACTCGGAGTTTTTCCCGCGAGAGTCTTCGGATTCTGGGTTGTTGGAAGAGATAGTTCACAAGTTCTTGCCAAAATCGAAGCCCAAAAACGAGACTTCGACTTCAACTTTGCCCGTTCCTGAGTCGCTTCCTCAACCAAAATTTGAACACAATGTTGTTTCCGCTACTAGGATGAGGGTTCCCAAGGTTGAAGCTTTTGGTGTTCCTTATGATTCTTCTCTCATGCAGCAATTTGATCACACTCTTCATGGCTTCAACACCATGCAGGGTATGTCTATGGAGAGAGACAACCAGTTTATGATGATGAACCATATTGCTGCTGCAGGGTGCTCCAACTTTGAAGATTTTCTTCAGTATCCAGAGCTGTTTAATTCCCTTGCAGCCAGGATGCAAAATGCTTAA 1080 0.5157 MEEALRHLNGMAPTQEPAVIYDHHHPKKCATKRALRDTANSGTAAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGAKARTNFVYPDAADPHLFEPYNIPKHCHVTTRFVPNQNLSGDFSATASAHNNNNASSSSLNMLLCRDFLNSSSHHFHNNNNNKFASGYVNSSSLSSSSAATNCLQGCCVTNANNANTLNLGTEVAEAIDEDSEFFPRESSDSGLLEEIVHKFLPKSKPKNETSTSTLPVPESLPQPKFEHNVVSATRMRVPKVEAFGVPYDSSLMQQFDHTLHGFNTMQGMSMERDNQFMMMNHIAAAGCSNFEDFLQYPELFNSLAARMQNA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01307 359 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Pumo1g01307 359 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Pumo1g01307 359 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Pumo1g01307 359 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Pumo1g01307 359 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Pumo1g01307 359 FunFam Ethylene-responsive transcription factor 2 46 105 - -
Pumo1g01307 359 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 34 206 - -
Pumo1g01307 359 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Pumo1g01307 359 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Pumo1g01307 359 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01307 Pumo-Chr1 21758091 21759170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01307 46 278 AP2-EREBP Transcription Factor Family AT1G24590 41.633 1.76e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo1g01307 AP2 4.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01307 - - gmx:102661952 478.018