Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01299 ATGGGTCGTCGTAAGATTGAAATTGCGAAGGTGAAAGACCCTACGAGGCAAGTCACATTTTCCAAGCGTCGAACAGGCTTATTCAAAAAGGCGAATGAATCGTCTATCTTGTGCGAAGTAGAAATTGCTATTGTTGTGTTCTCTATTGGAGACAAACCTTACTCTTTTGGGCACCCAAGTGTCGATGTTGTTGCTGCCAAGTTTCTTCAACAAGCGATCAATTCAAATGATGCTCAAGGAAACAATCCATCTAATGAAGTTGGTGACATGGATAGGCTGAATCAACAATTGTCTGAAATTCAAGCCCAAATACTTGAAGAAGAAAATAAGGGTGCAAAGAATGATGAGAGACTAAAAGCAACAAGAAGTGACACAACTCTCTCAATATAA 390 0.3974 MGRRKIEIAKVKDPTRQVTFSKRRTGLFKKANESSILCEVEIAIVVFSIGDKPYSFGHPSVDVVAAKFLQQAINSNDAQGNNPSNEVGDMDRLNQQLSEIQAQILEEENKGAKNDERLKATRSDTTLSI 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01299 129 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Pumo1g01299 129 FunFam Agamous-like MADS-box protein AGL62 12 78 - -
Pumo1g01299 129 PANTHER MADS BOX PROTEIN 3 106 - -
Pumo1g01299 129 MobiDBLite consensus disorder prediction 106 129 - -
Pumo1g01299 129 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 56 IPR002100 GO:0003677|GO:0046983
Pumo1g01299 129 MobiDBLite consensus disorder prediction 106 122 - -
Pumo1g01299 129 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Pumo1g01299 129 Coils Coil 90 110 - -
Pumo1g01299 129 ProSiteProfiles MADS-box domain profile. 1 60 IPR002100 GO:0003677|GO:0046983
Pumo1g01299 129 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Pumo1g01299 129 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Pumo1g01299 129 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01299 Pumo-Chr1 21693439 21693828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01299 1 120 Type I MADS-box Gene Family AT2G34440 44.628 1.26e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo1g01299 SRF-TF 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01299 - - gmx:100791127 192.971