Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g01282 | ATGGAAGACGAAATGTACGGCGTGTCGTCGACGGCGGAGTACTCGGACAAGGCGTTGATGACGCCGGAGAACATATTTCCGGCGGAGTACCACAGCTTCCTAATGTCCTCCGGCGGCCGGATTCCGATGTTCGGATCCGACGGTTTGCTCTCCGCCGCCGTGGCCGTCACCGCCGGCAACGAAACCGAACCCTACTACCCTAACGTCACCATCGCACCGGAAACTCCGCGCCACCACGACGCTTCTTCCCTCATCAAAGCCAAAATCGCCTCTCACCCTCACTACCCTCGCCTCCTCCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGTTTGTTAGAGGAAATCCGACTAGAAAACGACGTTTACAACAGGGACGTTGTTGTTTCCACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCTGATCTGACGCGGCCTTTTGACGAAGCCACCACCTTCCTCAACAAGATTGAAACGCAGCTTACCGATCTCTGCAGTGGTTCTTCTCTTCCAACACTTTCCGATGATGGGGGTGTATCTTCAGAAGAAGGTTTTAGTGCTGGAGATGGTGATCCCCAAGATGGCCAATCACGGAGTGAAGATCGAGAGCTGAAGGATAGGCTTTTACGCAAGTTTGGAAGTCACATTGGTTCTTTGAAATTGGAATTTTCAAAGAAGAAAAAGAGGGGTAAACTGCCGAAAGATGCTAGGCAAACACTACTTCAGTGGTGGAATATTCACTACAAATGGCCATACCCTACGGAGGGTGATAAGATTGCACTGGCTAAATCAACTGGGTTAGACCAGAAGCAAATTAACAACTGGTTTATTAATCAGAGAAAGCGTCACTGGAAACCATCTGAGAATATGCCGTTTTCTATGGTGGATGGTCTGACCGGTCGGTTCCTTACTGATGAATGA | 978 | 0.5031 | MEDEMYGVSSTAEYSDKALMTPENIFPAEYHSFLMSSGGRIPMFGSDGLLSAAVAVTAGNETEPYYPNVTIAPETPRHHDASSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRLENDVYNRDVVVSTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLTDLCSGSSLPTLSDDGGVSSEEGFSAGDGDPQDGQSRSEDRELKDRLLRKFGSHIGSLKLEFSKKKKRGKLPKDARQTLLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENMPFSMVDGLTGRFLTDE | 325 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g01282 | 325 | SMART | KNOX1_2 | 83 | 127 | IPR005540 | GO:0003677|GO:0005634 | |
Pumo1g01282 | 325 | Pfam | ELK domain | 222 | 243 | IPR005539 | GO:0003677 | |
Pumo1g01282 | 325 | SMART | KNOX2_2 | 134 | 185 | IPR005541 | GO:0003677|GO:0005634 | |
Pumo1g01282 | 325 | SMART | HOX_1 | 244 | 309 | IPR001356 | GO:0003677 | |
Pumo1g01282 | 325 | Gene3D | - | 241 | 311 | - | - | |
Pumo1g01282 | 325 | ProSiteProfiles | ELK domain profile. | 222 | 242 | IPR005539 | GO:0003677 | |
Pumo1g01282 | 325 | Pfam | KNOX2 domain | 137 | 184 | IPR005541 | GO:0003677|GO:0005634 | |
Pumo1g01282 | 325 | SMART | ELK_2 | 222 | 243 | IPR005539 | GO:0003677 | |
Pumo1g01282 | 325 | Pfam | KNOX1 domain | 85 | 125 | IPR005540 | GO:0003677|GO:0005634 | |
Pumo1g01282 | 325 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 87 | 312 | - | - | |
Pumo1g01282 | 325 | MobiDBLite | consensus disorder prediction | 192 | 221 | - | - | |
Pumo1g01282 | 325 | CDD | homeodomain | 254 | 306 | IPR001356 | GO:0003677 | |
Pumo1g01282 | 325 | Pfam | Homeobox KN domain | 262 | 301 | IPR008422 | GO:0003677|GO:0006355 | |
Pumo1g01282 | 325 | ProSitePatterns | 'Homeobox' domain signature. | 280 | 303 | IPR017970 | GO:0000981|GO:0006355 | |
Pumo1g01282 | 325 | ProSiteProfiles | 'Homeobox' domain profile. | 242 | 305 | IPR001356 | GO:0003677 | |
Pumo1g01282 | 325 | SUPERFAMILY | Homeodomain-like | 243 | 316 | IPR009057 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g01282 | Pumo-Chr1 | 21376407 | 21385633 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g01282 | 3 | 325 | Homeobox Transcription Factor Family | AT1G23380 | 65.672 | 1.27e-147 | 417 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-KNOX | Pumo1g01282 | KNOX2 | 6.3e-26 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g01282 | - | - | gmx:100786454 | 616.69 |