Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01282 ATGGAAGACGAAATGTACGGCGTGTCGTCGACGGCGGAGTACTCGGACAAGGCGTTGATGACGCCGGAGAACATATTTCCGGCGGAGTACCACAGCTTCCTAATGTCCTCCGGCGGCCGGATTCCGATGTTCGGATCCGACGGTTTGCTCTCCGCCGCCGTGGCCGTCACCGCCGGCAACGAAACCGAACCCTACTACCCTAACGTCACCATCGCACCGGAAACTCCGCGCCACCACGACGCTTCTTCCCTCATCAAAGCCAAAATCGCCTCTCACCCTCACTACCCTCGCCTCCTCCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGTTTGTTAGAGGAAATCCGACTAGAAAACGACGTTTACAACAGGGACGTTGTTGTTTCCACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCTGATCTGACGCGGCCTTTTGACGAAGCCACCACCTTCCTCAACAAGATTGAAACGCAGCTTACCGATCTCTGCAGTGGTTCTTCTCTTCCAACACTTTCCGATGATGGGGGTGTATCTTCAGAAGAAGGTTTTAGTGCTGGAGATGGTGATCCCCAAGATGGCCAATCACGGAGTGAAGATCGAGAGCTGAAGGATAGGCTTTTACGCAAGTTTGGAAGTCACATTGGTTCTTTGAAATTGGAATTTTCAAAGAAGAAAAAGAGGGGTAAACTGCCGAAAGATGCTAGGCAAACACTACTTCAGTGGTGGAATATTCACTACAAATGGCCATACCCTACGGAGGGTGATAAGATTGCACTGGCTAAATCAACTGGGTTAGACCAGAAGCAAATTAACAACTGGTTTATTAATCAGAGAAAGCGTCACTGGAAACCATCTGAGAATATGCCGTTTTCTATGGTGGATGGTCTGACCGGTCGGTTCCTTACTGATGAATGA 978 0.5031 MEDEMYGVSSTAEYSDKALMTPENIFPAEYHSFLMSSGGRIPMFGSDGLLSAAVAVTAGNETEPYYPNVTIAPETPRHHDASSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRLENDVYNRDVVVSTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLTDLCSGSSLPTLSDDGGVSSEEGFSAGDGDPQDGQSRSEDRELKDRLLRKFGSHIGSLKLEFSKKKKRGKLPKDARQTLLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENMPFSMVDGLTGRFLTDE 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01282 325 SMART KNOX1_2 83 127 IPR005540 GO:0003677|GO:0005634
Pumo1g01282 325 Pfam ELK domain 222 243 IPR005539 GO:0003677
Pumo1g01282 325 SMART KNOX2_2 134 185 IPR005541 GO:0003677|GO:0005634
Pumo1g01282 325 SMART HOX_1 244 309 IPR001356 GO:0003677
Pumo1g01282 325 Gene3D - 241 311 - -
Pumo1g01282 325 ProSiteProfiles ELK domain profile. 222 242 IPR005539 GO:0003677
Pumo1g01282 325 Pfam KNOX2 domain 137 184 IPR005541 GO:0003677|GO:0005634
Pumo1g01282 325 SMART ELK_2 222 243 IPR005539 GO:0003677
Pumo1g01282 325 Pfam KNOX1 domain 85 125 IPR005540 GO:0003677|GO:0005634
Pumo1g01282 325 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 312 - -
Pumo1g01282 325 MobiDBLite consensus disorder prediction 192 221 - -
Pumo1g01282 325 CDD homeodomain 254 306 IPR001356 GO:0003677
Pumo1g01282 325 Pfam Homeobox KN domain 262 301 IPR008422 GO:0003677|GO:0006355
Pumo1g01282 325 ProSitePatterns 'Homeobox' domain signature. 280 303 IPR017970 GO:0000981|GO:0006355
Pumo1g01282 325 ProSiteProfiles 'Homeobox' domain profile. 242 305 IPR001356 GO:0003677
Pumo1g01282 325 SUPERFAMILY Homeodomain-like 243 316 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01282 Pumo-Chr1 21376407 21385633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01282 3 325 Homeobox Transcription Factor Family AT1G23380 65.672 1.27e-147 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo1g01282 KNOX2 6.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01282 - - gmx:100786454 616.69