Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01272 ATGGTGGTGACAGTCAGATGTGGCCACTGCACAAGCCTCCTCTCAGTTAACATGATGAAAGCTTCCTTTGTCCCTTTCCACCTTCTAGCTTCCCTTACTCATGTTGAGCCAAAAGAAGGTGCTTCAGAAGATGGTGCAAACAAGACTTTGAACAGCTATAATGCATCTATAATGACTTATTCTGACTGTGAGGAAGAGAACATGACTCAAATTTCCAATGTCGCGAAACCCCCAGAGAAGAGACAGAGAACACCATCTGCTTATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTCAAAACCCTAACATGGCCCACAAGGAGGCTTTCAGCACTGCGGCTAAAAATTGGGCCAATTTCCCCCCTTCACAGTGTAATGGAGAAGCAGACAGCTGTAACCGGACAGAGCAACTTGTGGATCTGGACTCCCATGAAGAGCCTCGTGATGCGATTGAGATTAGTAAAGAAGGCCAAGGTTTCCGAGGAAGAAAGTTTCCAAGGAATTCTATCTTGACAAGGACACCTTTTGAGTGA 540 0.4519 MVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHVEPKEGASEDGANKTLNSYNASIMTYSDCEEENMTQISNVAKPPEKRQRTPSAYNRFIKEEIKRLKAQNPNMAHKEAFSTAAKNWANFPPSQCNGEADSCNRTEQLVDLDSHEEPRDAIEISKEGQGFRGRKFPRNSILTRTPFE 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01272 179 Gene3D High mobility group box domain 65 129 IPR036910 -
Pumo1g01272 179 CDD HMG-box_SF 83 126 - -
Pumo1g01272 179 Pfam YABBY protein 2 125 IPR006780 GO:0007275
Pumo1g01272 179 PANTHER PROTEIN YABBY 6-RELATED 2 138 IPR006780 GO:0007275
Pumo1g01272 179 MobiDBLite consensus disorder prediction 155 179 - -
Pumo1g01272 179 SUPERFAMILY HMG-box 74 126 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01272 Pumo-Chr1 21235218 21237878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01272 1 179 C2C2-YABBY Transcription Factor Family AT1G23420 51.515 1.23e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pumo1g01272 YABBY 2e-45 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01272 K25796 - gmx:100807136 316.62