Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01254 ATGAGTGGTTTGGGTATAGTAGAGTGGCTTAGACCCCTTGTTAAGACCAATGCTTGGGATTATTTAGTTGTTTGGAAATATGGGGATGACCCAACAAGGTTTATTGAGTGGATAGGTTGCTGTTGTAGAGGGAGTTGCAGTGTGAACATTGATGTGGGGAAGCCCAAAGAGGAAAAAAAGGGTGAAGTATGCAACTTGGCACCCATTTGCAGGGATAACCATTTTCAGCATCCAATTAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTTTGCATTGTCTCTCTATTCTGGTGTGCATGGAGAGGTTGCCATATCACAACAATCAAGATGGCTTACCCAGGATTCAATTGGAACCCAAGTTTTGATCCCAATTGTTGGTGGTCTCATTGAGCTCTTCACTGAAAAGCTGATTCCAAAGGATATGAATATCATAGAGTTCATAACAGCACATGGTTGTGTCTCTTTAAAGCAAGAATCCATATCTGCACAGAGCTACACCAGTCTGAATATCAGTGAACATCTGCCATTAAGGGAACAATACTCACAGTGGTGGCCAACACCCATGTCAACTTTGACTCCTAGTGTTCATCAGCCTGCAACAAAACAGTGCAGCTCCCATCATAGCATTGAAGGACCCTCCGGTGGGTCTAATCCTTCAACTGAAGAACCATCATTTGATTCAAAGTCTGTTGGATTGATTCCAAATGAGTATCTAAAACAATCAGTTAAAATATCTCCCATCCCTAAAACTAAAATGCCCAAGTACAACAAAACTTCAGGGAAACAGCAGAGAGAGAGGAATAGGAGGAACAAGATAAAGAAAGGGCTTTTTACTCTAAGGTCTCTAGTCCCAAAGATAACCAAGATGGATAGAGCTGCAATTCTTGCTGACGCGATTGACCATATAAAGGAATTGCAAACGCAAGTAAAAGAACTCAAAGATGAGGTCAGGGCTTTGGAAGAACAGGACTGTGAAAAGAACACACCACAATTGAGGATAACAACAGGCAAAGAACAAGAAAGAACCAGAAGTAACCCTCTTAATCAAAGTTCTTCTGGTTGCACTAAAAAGATGCAAATGGAGGGGCAAGTAGAAGTGCATCACATTAGCAAGACAGATTTCTTGATTAAGTTATACTGTGAGCAGAAGCAAGGTGGGTTCTCAAAGTTGATTGGAGCTATACATTCAATTGGACTACAGGTGGCTAGTGCCAATATGACCACATTTGGTGGCAAAGTCCTTAACATTCTGACGGTTAAGGCAACCAAGCAGGATATTCACCCAACTAAACTGAAAGAGTATTTAATACTAAAGACAAGTGATGATAGACGAAGTAGCAAACAAGTTCAGGAAAATGGTGGTGATATGAAGAGTTCAAGAAAGTAA 1392 0.4116 MSGLGIVEWLRPLVKTNAWDYLVVWKYGDDPTRFIEWIGCCCRGSCSVNIDVGKPKEEKKGEVCNLAPICRDNHFQHPIRTKACEALAQLPFALSLYSGVHGEVAISQQSRWLTQDSIGTQVLIPIVGGLIELFTEKLIPKDMNIIEFITAHGCVSLKQESISAQSYTSLNISEHLPLREQYSQWWPTPMSTLTPSVHQPATKQCSSHHSIEGPSGGSNPSTEEPSFDSKSVGLIPNEYLKQSVKISPIPKTKMPKYNKTSGKQQRERNRRNKIKKGLFTLRSLVPKITKMDRAAILADAIDHIKELQTQVKELKDEVRALEEQDCEKNTPQLRITTGKEQERTRSNPLNQSSSGCTKKMQMEGQVEVHHISKTDFLIKLYCEQKQGGFSKLIGAIHSIGLQVASANMTTFGGKVLNILTVKATKQDIHPTKLKEYLILKTSDDRRSSKQVQENGGDMKSSRK 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01254 463 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 150 IPR025610 -
Pumo1g01254 463 Coils Coil 297 324 - -
Pumo1g01254 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 307 IPR011598 GO:0046983
Pumo1g01254 463 Pfam Helix-loop-helix DNA-binding domain 263 308 IPR011598 GO:0046983
Pumo1g01254 463 MobiDBLite consensus disorder prediction 195 232 - -
Pumo1g01254 463 MobiDBLite consensus disorder prediction 336 357 - -
Pumo1g01254 463 MobiDBLite consensus disorder prediction 195 228 - -
Pumo1g01254 463 MobiDBLite consensus disorder prediction 443 463 - -
Pumo1g01254 463 Gene3D - 252 325 IPR036638 GO:0046983
Pumo1g01254 463 SMART finulus 264 313 IPR011598 GO:0046983
Pumo1g01254 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 324 IPR036638 GO:0046983
Pumo1g01254 463 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 139 435 - -
Pumo1g01254 463 MobiDBLite consensus disorder prediction 245 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01254 Pumo-Chr1 21093527 21096707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01254 94 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 28.177 3.54e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo1g01254 bHLH-MYC_N 5.9e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01254 - - gmx:100807261 768.459