Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01251 ATGCAAAACATGTCTCTGTGTGCTTCACTCTCCTCCACAACTTCACACCTCACTTCCCTTCCTTCCCTGTCCCTCCCTTTCACCTCTCCACTTTCTCTCAGATTTTCTTCCCTCAGAACCCCAATTACACCTCACAAGCTCCCCTTCTCAGCAAGGCCTGCTGCCAGAGTAGTGTTGGTGAAGTCTCAGGCCACAGCACCTGCCTCTTCTGAGGCTGTGAAAGTGACAGCTGTGCCTTCTGACATGAAGGCATGGGTGTATGGGGAATATGGGGGTGTGGATGTCTTGAAGCTGGACTCCAGTGTTGCTGTGCCTGATGTCAAGGAGGATCAGGTCCTAATCAAAGTTGTTGCTGCTGCTCTTAACCCTGTTGATGCCAAGAGAAGGCAGGGAAAGTTTAAGGCCACTGATTCTCCTCTTCCGACTGTTCCGGGCTATGATGTTGCGGGTGTGGTGGTGAAGGTTGGTAGTCAAGTGAAGGACTTTAAAGTGGGTGATGAAGTGTATGGAGATGTAAATGAGAAAGCATTAGAAGGGCCTAAGCAGTTCGGGTCTTTTGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACCAAAACCTAAGAATTTGGACTTTGCTCAGGCTGCTGCTCTTCCTCTAGCAATTGAGACTGCTTATGAGGGTTTGGAGAGGACTGGATTTTCTCCTGGTAAATCTATTCTTATTCTAAATGGTTCTGGAGGAGTTGGAAGCCTAGTGATTCAGCTAGCTAAGCAAGTTTTTGGAGCTTCGAGAGTCGCTGCCACTTCAAGCACTAGAAATTTGGACCTATTGAAAAGCTTGGGAGCTGATTTGGCTATTGACTACACAAAAGAGAACTTTGAAGATTTGCCAGAAAAATTTGATGTAGTTTATGATGCCATTGGGCAATGTGACAGGGCAGTGAAGGCTGTGAAAGAAGGTGGCAGTGTGGTGGCACTCACAGGTGCTGTTACACCACCTGGCTTCAGATTTGTAGTTACTTCCAATGGAGCAGTTCTGAGGAAACTAAACCCTTACTTAGAGAGTGGAAAGGTGAAGCCAATTGTAGACCCCAAAGGTCCATTCCCTTTTGACCAGCTTGCTGAAGCCTTCTCTTACCTTGAAACAAACCGAGCCACTGGAAAAGTTGTTATACATCCCATCCCTTGA 1173 0.4706 MQNMSLCASLSSTTSHLTSLPSLSLPFTSPLSLRFSSLRTPITPHKLPFSARPAARVVLVKSQATAPASSEAVKVTAVPSDMKAWVYGEYGGVDVLKLDSSVAVPDVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSQVKDFKVGDEVYGDVNEKALEGPKQFGSFAEYTAVEEKLLAPKPKNLDFAQAAALPLAIETAYEGLERTGFSPGKSILILNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLDLLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKAVKEGGSVVALTGAVTPPGFRFVVTSNGAVLRKLNPYLESGKVKPIVDPKGPFPFDQLAEAFSYLETNRATGKVVIHPIP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01251 390 Gene3D - 89 386 - -
Pumo1g01251 390 SUPERFAMILY GroES-like 79 236 IPR011032 -
Pumo1g01251 390 SMART PKS_ER_names_mod 91 386 IPR020843 GO:0016491
Pumo1g01251 390 Pfam Zinc-binding dehydrogenase 275 386 - -
Pumo1g01251 390 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 231 252 IPR002364 GO:0008270|GO:0016491
Pumo1g01251 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 204 327 IPR036291 -
Pumo1g01251 390 CDD MDR_like_2 82 386 - -
Pumo1g01251 390 Pfam Alcohol dehydrogenase GroES-like domain 110 172 IPR013154 -
Pumo1g01251 390 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 73 390 IPR044626 GO:0016628
Pumo1g01251 390 Gene3D - 223 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01251 Pumo-Chr1 21061137 21064580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01251 106 278 Monolignol Biosynthesis Gene Families AT4G39330 25.126 1.66e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01251 K18980 - gmx:100780585 635.95