Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01245 ATGAGTGAGGTGGATTGTGTAGAGCATTCACCTAGACAAGATGTAATAGAAGATCTGAGAGGGAGATATGAGGATTTAAGGTATATCTTAGGATTCGACATAGTTGTGGTTCCCTGCACAGTTGCCGTTGCTGCTAAGTTGGTTGCGCATGTGTCAAAATCACCACCATCACTGTGGGTAAGGCCTTCCCTGATGTGTACCCCAAAGCCATCAATGACCTTCTCCCCCCATTTCCAACGTCTACGTGTTCCTTTGCGACCTCGGCATTCGGAAGATCAAGGGAAAAGATCCTTGTTATTGCTTCTCTCGCTTTTCATCACCCTTCATCTTGCATGTTCTCAAACTTCTGTTGATAATTGTGTCCTTGATATTCAATTTTCTTCATCCTTGATTAATTCAAATTGTGAATTGTACAATTGGGGAGGGTTTACCAATGGCTGTTGTGGACCATATTTTGGTGATTACCTATATGCCTTGGGGCTGAGGGCCAACCAAACTGGAAAAATATTCTTGAATTCCTCAGAGCAAAAAAATTGTATAGCATCAATGGAAGCTTTGGACAAAAAAATCACTTGTTATGGGATAGAGAAGCTAACAAGTGGAGTTGGTGGTTGCTCTGATTACACTGTCACAGATGTTATTAATCAGCTTGGAGACAATTTTAGGAGATTGAATGAAGATTGCACGCCTTTAAGCAGAAATGGCAAGCCAAATGAAACTTGCACTAAATGTTTGAAAGCATGGGATGATATCAGTGCAAAATCAGACACTAGAAGGGGATCAGAATCAGCAAATATCAGTGCTTATCTTTGTAGGTTTGCAGTGCTTGTCTCACTGACAAGCACAAGAATTTATGATAGGGAATCAATTCAGGAAGTTTATAAATGCCTTGGGGAACACACCCTTTCTGCAGTTAATCAAGAAGTTAAGGTTAAGGCTAGTGCAAATGCTAAAATCAACTCAGGTCTCTGGATTGCCTTTGGCATAATAGGGGTTACGGTAGTGGTGTTTCTTGCCGCACTAGCATTATGTATCACAAGAATTAAAAGTGCTCCAACCGTACAAGATGAGTCTGATTCAACTTCCCTGAAGATAACTTTGAAGGATGTTTTTGTAGCAACAAACAATCTCAGCGCTTCAAATTTCATAGGCCAAGGCATAGCTGGAAAAGTTTACAAAGGTGTACTCTCCAACAATCAATCTGTTGCAGTGAAGCATATCACCAATGAAGGTTACTTGGAGACATTTGTTAGAGAAGTGAGAAGCCTTTCCCATGTTAGACATCAAAACCTAGTAGCTTTGCTGGGATACTGTGAAAGTGAAGCTGAATGCTTCCTAGTGTATGAGCTATGTCACAATGGAAACCTCTCAGAATGGCTATTTGGCAATGGTAAAGTTCTGTCATGGATTCAAAGACTAGAGATTGCCATTGATAGTGCAAGAGGTCTTGAGTTTCTTCATACCTACCCAAATGGTTGCATCGTTCACCGTGATATAAAGGCCAGAGATGTTGTTAAAGGCGGTGATATTTCAGAATTTGCTGATCCTAAACTCAAAGGGGAGTACTCTGTTGAAGCATTTGACATCGTACTAAATCTAGCTTTGTCTTGCATAGGGCTCAAGCGGCAAAGGCCATCTATAGAGCAAGTTTTATATAGCCTAGAAAAGGCACTCGATATTTCATTATAA 1689 0.4062 MSEVDCVEHSPRQDVIEDLRGRYEDLRYILGFDIVVVPCTVAVAAKLVAHVSKSPPSLWVRPSLMCTPKPSMTFSPHFQRLRVPLRPRHSEDQGKRSLLLLLSLFITLHLACSQTSVDNCVLDIQFSSSLINSNCELYNWGGFTNGCCGPYFGDYLYALGLRANQTGKIFLNSSEQKNCIASMEALDKKITCYGIEKLTSGVGGCSDYTVTDVINQLGDNFRRLNEDCTPLSRNGKPNETCTKCLKAWDDISAKSDTRRGSESANISAYLCRFAVLVSLTSTRIYDRESIQEVYKCLGEHTLSAVNQEVKVKASANAKINSGLWIAFGIIGVTVVVFLAALALCITRIKSAPTVQDESDSTSLKITLKDVFVATNNLSASNFIGQGIAGKVYKGVLSNNQSVAVKHITNEGYLETFVREVRSLSHVRHQNLVALLGYCESEAECFLVYELCHNGNLSEWLFGNGKVLSWIQRLEIAIDSARGLEFLHTYPNGCIVHRDIKARDVVKGGDISEFADPKLKGEYSVEAFDIVLNLALSCIGLKRQRPSIEQVLYSLEKALDISL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01245 562 Gene3D Transferase(Phosphotransferase) domain 1 451 506 - -
Pumo1g01245 562 SUPERFAMILY Protein kinase-like (PK-like) 360 506 IPR011009 -
Pumo1g01245 562 ProSiteProfiles Protein kinase domain profile. 377 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01245 562 Gene3D Phosphorylase Kinase; domain 1 343 450 - -
Pumo1g01245 562 Pfam Protein tyrosine and serine/threonine kinase 380 505 IPR001245 GO:0004672|GO:0006468
Pumo1g01245 562 FunFam Serine/threonine kinase protein 343 450 - -
Pumo1g01245 562 Pfam SPARK 118 261 IPR043891 -
Pumo1g01245 562 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 265 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01245 Pumo-Chr1 20973147 20979801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01245 365 505 Receptor kinase-like Gene Family AT5G01950 42.759 1.08e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Pumo1g01245 PK_Tyr_Ser-Thr 1.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01245 - - gmx:100790181 734.176