Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01243 ATGGCTTCTTCACTCAGAATCTCAAGACTCATCTCTCGCTCCTTTTCTTCTACCTCCTTCTTTTCTCGAGGTGGGAATGGTTACCTTGGTTCGAGACACTGTAAATACAGCACTGCTGCTGCCATTGAAGAAGAACCCATTAAACCATCAGTACAAGTAGAACACACCCAACTCTTAATTGATGGAAAATTCGTAGATGCGGCTTCTGGTAAAACTTTTCCAACTTTGGATCCCAGAACTGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACTCTGAAGATGTTGATCGAGCAGTTGCAGCTGCACGAAAAGCATTTGATCATGGACCATGGCCTAAGATGACAGCTTATGAAAGGCAAAGGATCTTGTTGCGCGCAGCTGATCTGATTGAGAAGCATAATGATGAGATTGCAGCACTTGAGACTTGGGATAATGGAAAGCCTTATGAACAATCTGCCAAGATTGAAATTCCAATGCTTGTTCGCCTAATTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTAACAGTTCCAGCTGATGGACCTTATCATGTGCAAACATTGCATGAACCCATTGGTGTTGCTGGTCAGATCATTCCTTGGAACTTCCCTCTTCTCATGTTTGCCTGGAAGGTTGGACCAGCATTGGCCTGTGGCAACACCATTGTTCTCAAAACAGCTGAGCAGACACCATTATCTGCTTTATATGTGGCAAAACTATTTCATGAGGCTGGACTTCCTGCTGGTGTTTTAAATGTAGTATCAGGCTTTGGTCCAACTGCTGGTGCTGCTCTTGCTAGTCACATGGAGGTTGATAAGCTTGCTTTTACTGGTTCCACTGATACTGGGAAAGTTGTCCTTGAACTGGCAGCTAAAAGCAATCTTAAGCCAGTTACTTTGGAGCTTGGTGGGAAATCCCCCTTTATTGTGTGTGAAGATGCTGATGTAGATCAAGCTGTTGAGCTAGCACACTTTGCTTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGGTCTCGAACATTTGTACATGAAAGTGTATACGATGAGTTTGTTGAGAAAGCAAAGGCTCGTGCTTTGAAACGTGTTGTTGGTGATCCATTCAAGGGGGGAATAGAGCAAGGTCCTCAGATTGATTCAGAGCAATTTGATAAAATACTGAGGTACATCAGATCTGGTGTTGAAAATGGGGCAACCCTTGAAACCGGAGGAGACAGGCTTGGCAGCAAGGGCTTCTACATTCAACCTACTGTCTTCTCAAATGTTAAGGATGGCATGCTGATTGCAAAGGATGAGATCTTTGGTCCAGTCCAGTCCATATTAAAATTCAAGGACCTTGGTGAGGTAGTTCAAAGAGCAAATAACACACGTTATGGGCTTGCAGCAGGAGTGTTCACACAGAACATGGACACCGCCAACACTTTGACACGGGCACTGAGGGTTGGAACAGTGTGGATAAACTGCTTTGACACATTTGATGCTGCAATTCCCTTTGGAGGGTACAAGATGAGTGGTCAGGGCAGAGAAAAAGGAGAGTATAGTCTCAAGAACTACTTGCAAGTGAAGGCTGTTGTCAATCCCTTGAAGAACCCAGCATGGCTTTGA 1611 0.4451 MASSLRISRLISRSFSSTSFFSRGGNGYLGSRHCKYSTAAAIEEEPIKPSVQVEHTQLLIDGKFVDAASGKTFPTLDPRTGEVIAHVAEGHSEDVDRAVAAARKAFDHGPWPKMTAYERQRILLRAADLIEKHNDEIAALETWDNGKPYEQSAKIEIPMLVRLIRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVAKLFHEAGLPAGVLNVVSGFGPTAGAALASHMEVDKLAFTGSTDTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESVYDEFVEKAKARALKRVVGDPFKGGIEQGPQIDSEQFDKILRYIRSGVENGATLETGGDRLGSKGFYIQPTVFSNVKDGMLIAKDEIFGPVQSILKFKDLGEVVQRANNTRYGLAAGVFTQNMDTANTLTRALRVGTVWINCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVNPLKNPAWL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01243 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 306 495 IPR016163 GO:0016620
Pumo1g01243 536 CDD ALDH_F2BC 53 527 - -
Pumo1g01243 536 FunFam Mitochondrial aldehyde dehydrogenase 2 308 497 - -
Pumo1g01243 536 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 40 526 - -
Pumo1g01243 536 SUPERFAMILY ALDH-like 51 529 IPR016161 GO:0016491
Pumo1g01243 536 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 330 341 IPR016160 GO:0016491
Pumo1g01243 536 FunFam Aldehyde dehydrogenase, putative 498 524 - -
Pumo1g01243 536 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 302 309 IPR029510 GO:0016491
Pumo1g01243 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 60 524 IPR016162 GO:0016491
Pumo1g01243 536 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 60 325 - -
Pumo1g01243 536 Pfam Aldehyde dehydrogenase family 64 526 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01243 Pumo-Chr1 20953736 20957597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01243 6 536 Aldehyde Dehydrogenase Gene Family AT3G48000 77.715 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01243 K00128 - gmx:100777399 1027.31