Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01241 ATGTCTCGTGTTTACGTTGGAAATTTAGACCCTCGAGTCTCTGAGAGGGATCTCGAAGATGAATTTCGTATATATGGTGTTCTCAGGAGTGTTTGGGTAGCTCGTAGACCACCGGGATATGCATTTCTTGAGTTTGATGATCGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGAGGAGGGCGTGGGCGTGGAGGTGAAGACATGAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGTCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCAAGTTATGGTTATGATCGCAGGAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATATCACCTCCCCGGGGTCGCAGCTACAGCAGGTCCCCTCCATATCGTCCTTCTCGCCGTGATTCACCTTATGCCAATGGAGATTAA 540 0.5037 MSRVYVGNLDPRVSERDLEDEFRIYGVLRSVWVARRPPGYAFLEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGRGGGGRGRGGEDMKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGYDRRSYSPRGRRSPRRRSISPPRGRSYSRSPPYRPSRRDSPYANGD 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01241 179 Gene3D - 2 69 IPR012677 -
Pumo1g01241 179 CDD RRM_SRSF3_like 3 71 - -
Pumo1g01241 179 FunFam Serine/arginine-rich splicing factor RSZ21A isoform C 76 151 - -
Pumo1g01241 179 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Pumo1g01241 179 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 168 - -
Pumo1g01241 179 Pfam Zinc knuckle 90 105 IPR001878 GO:0003676|GO:0008270
Pumo1g01241 179 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Pumo1g01241 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Pumo1g01241 179 SMART rrm1_1 3 69 IPR000504 GO:0003723
Pumo1g01241 179 ProSiteProfiles Zinc finger CCHC-type profile. 90 105 IPR001878 GO:0003676|GO:0008270
Pumo1g01241 179 Gene3D - 81 151 - -
Pumo1g01241 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Pumo1g01241 179 MobiDBLite consensus disorder prediction 111 179 - -
Pumo1g01241 179 MobiDBLite consensus disorder prediction 67 86 - -
Pumo1g01241 179 SMART c2hcfinal6 90 106 IPR001878 GO:0003676|GO:0008270
Pumo1g01241 179 SUPERFAMILY Retrovirus zinc finger-like domains 81 107 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01241 Pumo-Chr1 20904018 20907728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01241 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 40.323 2.67e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01241 K12896 - gmx:100813882 199.134