Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01238 ATGGCTTCAAGATCATATGCTAATCTCTTTGACTTAGCTAGTGGAGACTTTCTTGATATTCCTCGCACCCCAAGAGCTCTTCCGAGGGTTATGACCGTTCCTGGAATTATTTCGGACCTGGATGGTTGTGGTTGTAATGATGGGGATTCAGATGTTAGCTCTTCTGGATGTAGGGAGCGAAAAATCATTGTGACAAACATGTTGCCATTGCAGGCTAAAAGAGATATAGAAACTGCTAAATGGGTCTTCAGTTGGGATGAGGATTCAATTTTTTTACAATTAAAAGATGGTTTTTCTGCTGAGACTGAGGTAATCTATGTGGGTTCTCTCAAGGTTGAAATAGATGCCTGTGAGCAGGATGCAGTTGCTCAGAGGTTGCTGGATGAATTTAATTGTGTACCTACCTTTCTACCCCATGATCTCCAAAAAAAGTTCTACCTTGGATTTTGTAAGCAGCAACTTTGGCCTCTCTTTCATTATATGCTACCCATATGCCCAGATCACGGTGATCGCTTTGACCGTATACTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTCATGGAAGTAATTAATCCTGATGATGATTTTGTTTGGGTTCATGACTATCACTTAATGGTTTTGCCTACTTTCTTGAGGAAGCGATATAATCGGGTTAAACTTGGGTTCTTTCTGCATAGTCCTTTCCCTTCATCTGAAATCTACCGAACTTTACCAGTAAGGGATAAAATTTTGAGGGGATTGTTGAACTCTGATTTAATTGGCTTTCACACATTTGATTATGCTCGCCACTTTCTTTCTTGCTGCAGTAGAATGCTAGGCCTGGACTATGAATCTAAGCGAGGACATATAGGGCTTGATTACTTTGGCCGCACTATATTTATTAAAATCTTGCCTGTAGGCATTCACATGGGTAGGCTTGAATCTGTATTAAATCTGTCTTCTACATCTGCTAAACTAAAAGAGGTTCAGGAAGAGTTTAAGGATAAGAAAGTAATTCTTGGTGTTGATGACATGGATATTTTTAAGGGCATTAGTCTGAAACTTCTAGCTGTGGAGCATCTGCTGCAGCAGAATCCAGATTTGCAGGGCAAAGTTGTCCTAGTTCAAATTGTAAATCCTGCAAGGGGCTCAGGGAAGGATGTTCAGGAAGCAAAGAACGAAACATATTTAATTGCCCGGAGGATCAATGATACATATAGCTCAGATAACTATCAGCCAGTCATTCTCATTGACCGCCCTGTTCCTCGCTTTGAGAAGAGTGCCTATTATGCTGTAGCTGAATGTTGCATTGTCAATGCTGTAAGGGATGGTATGAACTTAGTCCCATACAAATATATCGTCTGCAGACAGGGAACTGCACAACTAGATGAAGCATTGGGTAGAAAAAGTGATTCTCCTCGTACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTTAGTGGGGCAATAAGGGTCAATCCCTGGGACGTGGATGCCGTAGCCGATGCTATGTATGCAGCCCTTACTATGAGTGATTCAGAGAAGCAGTTGCGCCATGAGAAACACTATCACTATGTCAGTTCTCACGATGTGGCATATTGGGCACGCAGCTTTATGCAGGATTTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGATGCTGGGGATTTGGTTTGGGCTTGGGGTTCAGAGTTGTTTCTCTTTCTCATGGTTTTAGGAAGTTGTCAATTGACCATATTGTTTCAGCATACAAGAGAACCAATAGAAGGGCCATCTTTCTTGATTATGATGGTACTGTTGTACCACAATCTTCCATGAGTAAAAACCCCAGCCCTGAAGTCATCTCCGTCTTAAATGCTCTGTGTAACGATCCCAAGAATATTGTGTTCATTGTTAGTGGGAGGGGAAGGGATTCACTGAGTGATTGGTTTACTTCATGCCAAATGCTGGGACTTGCAGCAGAACATGGGTACTTTTTAAGGTGGAACAAAGATTCAGAATGGGAAGCCAGTCACTTGTCTGCGGACCTGGATTGGAAAAAGATAGTGGAACCTGTCATGCAGTTGTATACAGAAGCAACCGATGGTTCTAATATTGAAACTAAGGAGAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAAGAATTGTTGGATCACTTGGAAAGTGTGCTTGCTAATGAACCAGCAGTAGTTACAAGAGGCCAGCATATTGTTGAAGTTAAACCACAGGGAATAAGCAAAGGTTTGGTAGCTGAACAGGTTCTTATGACCATGGTTAATGGCGGCAATCCACCAGATTTTGTACTCTGCATTGGAGATGATAGGTCTGACGAGGACATGTTTGAGAGCATTTTGAGGACGGTTTCGTGCCCGTCATTACCATCAGCTCCAGAGATCTTTGCCTGCACTGTGGGTAGGAAGCCTAGCAAGGCCAAGTATTTTCTTGATGATGCTTCTGATGTTGTGAAGTTGCTTCAGGGCCTTGCTGCTTCATCCAATCCAAAACCCAGGCATCTTGCTCATTTTCAAGTCTCTTTTGAGAGCACAGTTTGA 2586 0.4246 MASRSYANLFDLASGDFLDIPRTPRALPRVMTVPGIISDLDGCGCNDGDSDVSSSGCRERKIIVTNMLPLQAKRDIETAKWVFSWDEDSIFLQLKDGFSAETEVIYVGSLKVEIDACEQDAVAQRLLDEFNCVPTFLPHDLQKKFYLGFCKQQLWPLFHYMLPICPDHGDRFDRILWQAYVSANKIFADKVMEVINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDKILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLSSTSAKLKEVQEEFKDKKVILGVDDMDIFKGISLKLLAVEHLLQQNPDLQGKVVLVQIVNPARGSGKDVQEAKNETYLIARRINDTYSSDNYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTAQLDEALGRKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDVDAVADAMYAALTMSDSEKQLRHEKHYHYVSSHDVAYWARSFMQDLERACKDHYTKRCWGFGLGLGFRVVSLSHGFRKLSIDHIVSAYKRTNRRAIFLDYDGTVVPQSSMSKNPSPEVISVLNALCNDPKNIVFIVSGRGRDSLSDWFTSCQMLGLAAEHGYFLRWNKDSEWEASHLSADLDWKKIVEPVMQLYTEATDGSNIETKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAVVTRGQHIVEVKPQGISKGLVAEQVLMTMVNGGNPPDFVLCIGDDRSDEDMFESILRTVSCPSLPSAPEIFACTVGRKPSKAKYFLDDASDVVKLLQGLAASSNPKPRHLAHFQVSFESTV 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01238 861 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Pumo1g01238 861 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
Pumo1g01238 861 Gene3D - 591 709 IPR023214 -
Pumo1g01238 861 Gene3D - 721 853 IPR023214 -
Pumo1g01238 861 FunFam Alpha,alpha-trehalose-phosphate synthase 314 529 - -
Pumo1g01238 861 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Pumo1g01238 861 Gene3D Glycogen Phosphorylase B; 54 312 - -
Pumo1g01238 861 NCBIfam HAD-IIB family hydrolase 593 794 IPR006379 -
Pumo1g01238 861 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 708 - -
Pumo1g01238 861 Pfam Trehalose-phosphatase 595 829 IPR003337 GO:0003824|GO:0005992
Pumo1g01238 861 Gene3D Glycogen Phosphorylase B; 313 529 - -
Pumo1g01238 861 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 721 852 - -
Pumo1g01238 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 840 IPR001830 GO:0003824|GO:0005992
Pumo1g01238 861 NCBIfam trehalose-phosphatase 590 839 IPR003337 GO:0003824|GO:0005992
Pumo1g01238 861 CDD HAD_TPP 593 834 - -
Pumo1g01238 861 SUPERFAMILY HAD-like 592 840 IPR036412 -
Pumo1g01238 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01238 Pumo-Chr1 20855042 20860365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01238 1 861 Trehalose Biosynthesis Gene Families AT1G60140 74.564 0.0 1385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01238 K16055 - gmx:100775779 1694.48