Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01233 ATGAATTGGGTTAATTCTCAAATCTGCCATAGCAGTGATGCTATAAACAACCCCACTAGTATTTCCTCATCTTCTTCTTGTTGTTCATCTTCTGCATCATTGCCTTATAGTTCTGACTACAAGAAGCAACTAGCCCCTCCTCTAGCTTCTTCATCTGGCACTAGAATAAGCCCTGCACTTGTTTTCATCTTTGTCATTTTAGCTATTGTGTTTTTCATCTCTGGCCTCCTTCACTTGCTTGTTAGATTCCTCATAAGGCACAGGTCCTCTTCATCAATTTCTGAGTCTAATAGGTACCCTGACATGTCTGAATCTGATCCTTACCAGAGGCAGCTACAGCAGCTCTTCCATCTCCATGATTCAGGCCTAGATCAGGCCTTCATAGATGCTCTCCCAGTTTTCCTCTACAAAGACATAATAGGTTTGAAGGAGCCATTTGATTGTGCAGTGTGCCTTTGCCAGTTCTCAGAACAAGACATGCTGAGGCTGCTGCCCCTTTGCAACCATGCTTTTCACATTGATTGCATAGACACATGGCTGCTGTCAAATTCAACCTGTCCTCTATGTAGAGGGAGTCTTTATGAGCCAAGCTTTGCCCTTGAAAACCCAGTTTATGACTTTGAGGGTCTGAGGGAGGAAGATGGGGTTTCAGGCAGTGTTGCTGGAGAGGCTGGTGGTGCCAACAAACATGCAGAAAATCACATAATGAGTGGGAAAAGGGTATTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAAATAATGGAGAGGGAGTGGAAAGAGGTGGTGGAGGGGAGAGTAGTACAAGTAATTTGGATGTTAGGAGATGCTATTCAATGGGGTCCTTCCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTAGGCCCCAATAGAGGTGATGGTGAAGGTGCCAGTGGTGGTGGCAGTATGAGACAATTGAAAGGGAGATTGGCCCATTGTGGGAATTCTTCCACTGATGGAGATGTTGAGGGGGAAAAAAATCAACATTGCAAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAG 1062 0.4473 MNWVNSQICHSSDAINNPTSISSSSSCCSSSASLPYSSDYKKQLAPPLASSSGTRISPALVFIFVILAIVFFISGLLHLLVRFLIRHRSSSSISESNRYPDMSESDPYQRQLQQLFHLHDSGLDQAFIDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEPSFALENPVYDFEGLREEDGVSGSVAGEAGGANKHAENHIMSGKRVFSVRLGKFRSSNNGEGVERGGGGESSTSNLDVRRCYSMGSFQYVVADSDLQVALGPNRGDGEGASGGGSMRQLKGRLAHCGNSSTDGDVEGEKNQHCKERGKLFCFQDLAMV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01233 353 FunFam RING-H2 finger protein ATL46 110 195 - -
Pumo1g01233 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 195 IPR013083 -
Pumo1g01233 353 SMART ring_2 148 189 IPR001841 -
Pumo1g01233 353 CDD RING-H2_EL5-like 147 190 - -
Pumo1g01233 353 Pfam Ring finger domain 147 190 IPR001841 -
Pumo1g01233 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 51 298 - -
Pumo1g01233 353 SUPERFAMILY RING/U-box 127 196 - -
Pumo1g01233 353 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01233 Pumo-Chr1 20804208 20806042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01233 50 303 C3H Transcription Factor Family AT2G18650 40.780 1.67e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01233 - - gmx:100818135 493.426