Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01226 ATGACTGTGGATGAAGTCGGTAGTAGCTCTGAGTGGAGCAAAGAACAGGATAAAGCATTTGAAAATGCCTTGGCAATTCATCCTGAGGATGCTTCAGACCGATGGGAGAAGATTGCAGCTGATGTACCAGGAAAAACCTTGGAAGAGATTAAACACCACTATGAGCTCTTGGTTGAAGATGTTAACCAGATTGAATCTGGTTGTGTGCCTTTGCCATCTTATAATTCTTCTTCAGAGGGCTCAACAAGCCATGCTAGTGATGAAGGAGCCGGCAAGAAGGGAGGCCCCTCTTGGAATTGTAACAACGAATCTAATCATGGAACTAAGGCTTCAAGATCTGATCAGGAACGACGAAAGGGTATTGCATGGACAGAGGATGAACACAGGTTATTCCTTCTTGGCTTGGAAAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGAAACTTTGTGGTGACAAGAACGCCTACACAAGTAGCAAGCCATGCCCAAAAGTACTTCATTCGTTTGAACTCGATGAACAAAGACAGAAGGCGATCCAGCATCCATGACATCACCAGTGTCAACAATGGAGATGTTTCAGCATCTCAAGGACCAATTACTGGTCAAACAAACGGTTCTGCAGCAGCAAATTCTGCTGGAAAATCAACCAAACCAGCCCCTCCAACCCCAACTGCTGCTCCAGGTGTAGGAATATATGCTGCTCCTACCATTGGACAACCTATAGGTGGACCCCTTGTATCTGCAGTTGGCACCCCAGTGATGAACCTTCCTCCCCCGGCACACATGGTGTATGGTCTCGGAGCACCAGTTCCTGGGGCAGTTGTTCCTGGAGCACCAATGAACTTAGGTCCTGTGCCATTCCCTATGCCACATACATCTGCTCATCGATGA 894 0.4687 MTVDEVGSSSEWSKEQDKAFENALAIHPEDASDRWEKIAADVPGKTLEEIKHHYELLVEDVNQIESGCVPLPSYNSSSEGSTSHASDEGAGKKGGPSWNCNNESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSASQGPITGQTNGSAAANSAGKSTKPAPPTPTAAPGVGIYAAPTIGQPIGGPLVSAVGTPVMNLPPPAHMVYGLGAPVPGAVVPGAPMNLGPVPFPMPHTSAHR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01226 297 MobiDBLite consensus disorder prediction 184 219 - -
Pumo1g01226 297 CDD SANT 11 58 IPR001005 -
Pumo1g01226 297 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Pumo1g01226 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Pumo1g01226 297 CDD SANT 122 167 IPR001005 -
Pumo1g01226 297 MobiDBLite consensus disorder prediction 72 119 - -
Pumo1g01226 297 MobiDBLite consensus disorder prediction 177 228 - -
Pumo1g01226 297 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Pumo1g01226 297 FunFam Transcription factor SRM1 4 71 - -
Pumo1g01226 297 FunFam transcription factor MYB1R1 121 172 - -
Pumo1g01226 297 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Pumo1g01226 297 SMART sant 119 169 IPR001005 -
Pumo1g01226 297 SMART sant 8 60 IPR001005 -
Pumo1g01226 297 MobiDBLite consensus disorder prediction 1 21 - -
Pumo1g01226 297 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Pumo1g01226 297 Gene3D - 121 173 - -
Pumo1g01226 297 PANTHER TRANSCRIPTION FACTOR KUA1 8 286 - -
Pumo1g01226 297 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Pumo1g01226 297 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Pumo1g01226 297 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Pumo1g01226 297 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Pumo1g01226 297 NCBIfam myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Pumo1g01226 297 Gene3D - 4 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01226 Pumo-Chr1 20737685 20742908 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g01226 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01226 - - gmx:100820272 531.561