Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01224 ATGCCATTTGGTTTGGTCTCAGCATGGAACAAGCGTCGTAGAAGCAAGTCTCAAGATCATTCAGACCCTTGGATTTATAAACCTGCAGAGTTTTGGCAGCTTGAAGATCAAATACCACAACCTACTAAAAGGAGGCATAGATCATCTGTTTTCACACTCAAAGAGATGGAAGAGGCAACATGTTCATTCGGTGATGGTAATCTGCTTGGAAAAGGAGGATTTGGCAGGGTCTACAGGGGCACTTTGAAGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGCTGCCAGCAATTAAAGCAGCAGAGGGGGAGCGCGAATTCCGTGTAGAGGTTGACATATTAAGCAGACTTGATCACCCAAATCTTGTTTCTTTGATAGGATACTGTGCTGATGGGAAGCATAGGTTCCTAGTTTATGAATATATGCATAATGGGAACCTGCAAGATCATCTGAATGGAATTGGAGAAAGAAAAATGGATTGGCCTGTGAGACTCAAAGTGGCATTGGGAGCTGCAAAAGGGCTTGCTTATCTCCATTCAAGTTCTTGTCTTGGAATTCCTATTGTTCATAGAGATTTCAAATCCACCAATGTTCTCTTAGATGCCAATTATGAAGCAAATATATCTGATTTTGGGCTTGCCAAACTAATGCCAGAAGGACAGGAGACACATGTGACTGCCAGAGTACTTGGTACCTTTGGCTATTTTGACCCCGAGTATACATCGACTGGAAAACTAACTCTACAAAGTGATGTTTATGCTTTTGGGGTTGTTCTTCTCGAGCTTCTGACTGGACGTCGAGCAGTAGATCTAAACCAAGGCCCAAATGATCAAAACCTTGTACTACAGGTGAGGCACTTGCTGAATGACCGTAAGAGGCTCCGTAAGGTGATAGATCCAGAGATGGCTCGAAATTCTTACACCATAGAGTCTATATTCATGTTTGCCAATCTGGCATCACGATGTGTCCGTAGTGAGAGTAATGAGAGACCTTCAATGGTGGATTGTGTCAAAGAAATCCAAATGATTATGTACACAAATTCAAAGGGGTTGGGAATGGTTATGCATAGCTTGAGATTGGTCTAA 1086 0.4254 MPFGLVSAWNKRRRSKSQDHSDPWIYKPAEFWQLEDQIPQPTKRRHRSSVFTLKEMEEATCSFGDGNLLGKGGFGRVYRGTLKSGEVVAIKKMELPAIKAAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHNGNLQDHLNGIGERKMDWPVRLKVALGAAKGLAYLHSSSCLGIPIVHRDFKSTNVLLDANYEANISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHLLNDRKRLRKVIDPEMARNSYTIESIFMFANLASRCVRSESNERPSMVDCVKEIQMIMYTNSKGLGMVMHSLRLV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01224 361 Pfam Protein kinase domain 66 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01224 361 PIRSF ILK 32 352 - -
Pumo1g01224 361 ProSiteProfiles Protein kinase domain profile. 63 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01224 361 Gene3D Transferase(Phosphotransferase) domain 1 142 353 - -
Pumo1g01224 361 FunFam receptor-like serine/threonine-protein kinase NCRK 142 352 - -
Pumo1g01224 361 SUPERFAMILY Protein kinase-like (PK-like) 49 347 IPR011009 -
Pumo1g01224 361 Gene3D Phosphorylase Kinase; domain 1 32 141 - -
Pumo1g01224 361 FunFam serine/threonine-protein kinase PBS1-like 32 141 - -
Pumo1g01224 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Pumo1g01224 361 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Pumo1g01224 361 PANTHER OS01G0750732 PROTEIN 35 345 - -
Pumo1g01224 361 CDD STKc_IRAK 69 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01224 Pumo-Chr1 20720466 20729693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01224 50 340 Receptor kinase-like Gene Family AT3G58690 45.946 2.96e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Pumo1g01224 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01224 - - gmx:100820613 684.871