Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01217 ATGAATGCGGAACCATCGCCGGCGCTCCTCATGTCGGTTTCCTGCATCTCCGACTACGACCTCCTCTGCGCCGAGGACACCTCCGGAATCCTCTCCGGAGAGTCGCCGGAATGCTCCTCCGACATCGACTCCTCTCCGCCGCCGCCGTCGCCTTTGACGACGGAGGATTATTCCATCGCGAGTTTCATCGAGCACGAGCGCAACTTCGTCCCCGGATTCGAGTATCTGTCGAGGTTCCAATCTCGCTCCCTCGACGCCAACGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGGTACACGCGTATTATGGCTTTCAGCCTTTGACGGCGTACCTCGCCGTCAATTATCTGGATCGGTTTTTGGATTCTCACCGGTTGCCGCAAACAAATGGGTGGCCTCTGCAACTTCTATCTGTTGCATGTTTGTCTTTGGCAGCGAAGATGGAGGAACCTCTTGTTCCATCTCTCTTGGACCTTCAGATAGAAGGTGCCAAGTACATATTTGAGCCGAGAACAATTCGTAGGATGGAGCTACTTGTTCTGGGTGTCTTGGATTGGAGGCTAAGATCGGTAACCCCACTTTGCTTCCTCGCTTTCTTTGCGTGCAAAGTAGATTCAGCTGGAACTTTTACCAGGTTCCTCATTTCCCGGGCTACAGAAATCATCGTATCTAATATCCAAGAGGCTAGCTTTCTTGCTTACTGGCCATCATGCATTGCTGCTGCAGCCATACTCTCTGCAGCTAATGAAATTCCTAATTGGTCTGTGGTTAAGCCCGAGCATGCTGAGTCATGGTGCGAGGGACTAAGAAAAGAAAAAGTTATAGGATGCTACGAGTTGATGCAAGAACTTGTGATTAACAATAACCGCAGGAAACTCCCTACTAAAGTGTTGCCGCAGCTGAGAGTAACAACTCGGACCCGAATGAGGTCAAGTGTCTTATCATTCTCATCATCATCATCATCATCATCATCCTCATCATCCTCCTTCTCATTGTCTTGTAAGAGGAGGAAATTAAATAACTGTTTGTGGGTAGATGACAAAGGAAACTCCGAGTGA 1059 0.4929 MNAEPSPALLMSVSCISDYDLLCAEDTSGILSGESPECSSDIDSSPPPPSPLTTEDYSIASFIEHERNFVPGFEYLSRFQSRSLDANAREESVAWILKVHAYYGFQPLTAYLAVNYLDRFLDSHRLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQIEGAKYIFEPRTIRRMELLVLGVLDWRLRSVTPLCFLAFFACKVDSAGTFTRFLISRATEIIVSNIQEASFLAYWPSCIAAAAILSAANEIPNWSVVKPEHAESWCEGLRKEKVIGCYELMQELVINNNRRKLPTKVLPQLRVTTRTRMRSSVLSFSSSSSSSSSSSSSFSLSCKRRKLNNCLWVDDKGNSE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01217 352 FunFam D2/4-type cyclin 72 189 - -
Pumo1g01217 352 Pfam Cyclin, N-terminal domain 60 188 IPR006671 -
Pumo1g01217 352 CDD CYCLIN_AtCycD-like_rpt2 191 281 - -
Pumo1g01217 352 SMART Cyclin_C_2 191 323 IPR004367 -
Pumo1g01217 352 MobiDBLite consensus disorder prediction 33 52 - -
Pumo1g01217 352 PANTHER CYCLINS 62 289 IPR039361 -
Pumo1g01217 352 Gene3D - 61 255 - -
Pumo1g01217 352 SUPERFAMILY Cyclin-like 58 188 IPR036915 -
Pumo1g01217 352 Pfam Cyclin, C-terminal domain 191 302 IPR004367 -
Pumo1g01217 352 ProSitePatterns Cyclins signature. 89 120 IPR006671 -
Pumo1g01217 352 Gene3D - 72 189 - -
Pumo1g01217 352 SUPERFAMILY Cyclin-like 192 293 IPR036915 -
Pumo1g01217 352 SMART cyclin_7 94 182 IPR013763 -
Pumo1g01217 352 CDD CYCLIN_AtCycD-like_rpt1 88 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01217 Pumo-Chr1 20584428 20588875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01217 6 351 Core Cell Cycle Gene Families AT1G70210 60.857 1.59e-135 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01217 K18810 - gmx:100818190 581.637