Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01211 ATGATTGTTACTCGTTCAGCTTTGATGCTCCATCTCCAAAACCCACCAATTCGCTACCACTTCTTCTCCCACTTCAGCCATGCTCACACTTCATTCCTCAAACCCAAATTGCCTTCTCTATTCAAACCTCGCCCCTTCTCTATTCAAACACAAACCAGATCCTTTGTAAGTGTTGTTGCATCATCATCATCATCACAAGGTTCCAATGGCAGAGACACTTTCTTTTCAGAAGAAAATGTTTCGTGGAGCTCACTCGGTCTCTCTGATACCATTTCTCGAGCGCTATCTAACATTGGCCTCAATAGACCCTCTCTTGTTCAGGCCTCTTCTGTACCACCTGTGCTGTCAGGAAAGGATGTTATTATTGCCGCAGAGACTGGTAGTGGTAAGACATACAGTTACCTAGTTCCTCTAATTGATCAGCTAAGGGATGCCCAGGAACATTCTGTACATGCTGTGTCTGATCAAGAAGTGACCTCACCGCAGAAAGTTCTGCTCGTTCTTTGTCCAAATGTGCAACTTTGTGAGCAGGTAGTGAGGATGGCTAACAGTCTCTGTAGAGATGATGGTGAGACGATAGTTAGTGTGGCAGCCATTTGTGGCAGACAGGGATGGCCAATTCGGGAACCTGATGTCATTGTGACAACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAACCCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGCTTTGATGAAAAACTCCTGTCGCAATCAAAAAAATCAGTAGCAGAGTTTCCAATGAAACAGGAATCTTCCTTGCCATCAGAAGATGCTTTTGAAGGTGAAGAGGAACTTCAAATTGAAGCCATCTCAGAAGAGGATGACAATGATAAAGAGGATATTGTTGATATTAGTAATGAAGCTGAAACTGTTAAACAAAGAGACTGGAGGAGAGTGAGGAAAAGTTATGAGCGTAGTAAACAGTATGTTTTTGTTGCTGCTACACTTCCAGTGAATGGAAAGAAAACAGCTGGAGGGATATTGAAATATATGTTTCCTGATGCTGAGTGGGTTTGTGGAAACTATCTTCATTGTCACAATCCGAGATTGGAGCAAAAATGGATAGAAGTTACGGTTGATACTCAAGTGGATGAACTCATAAAGGCTGTGAATCACAGATTCAGATCTGAAGATTTGGATAATGCTGGTGGCATTCACAGAACAATGAATTGCACATTGGAAGAGCGAGCACAGACCTTAGTTGATTTTCATGATAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGTGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGCCGTACAGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTACACTGAATCCAACAGGGAGCTCGTTGATGCAGTTCGTCGGGCAGGGGAACTTGGTCAACCTGTGGAAACTGCATTTAGCAGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAGAGGGGTACTAACAAAGCCAGAGATTCAGCAACAATTAAAGAGAGTGCTCTAGCATGA 1659 0.4304 MIVTRSALMLHLQNPPIRYHFFSHFSHAHTSFLKPKLPSLFKPRPFSIQTQTRSFVSVVASSSSSQGSNGRDTFFSEENVSWSSLGLSDTISRALSNIGLNRPSLVQASSVPPVLSGKDVIIAAETGSGKTYSYLVPLIDQLRDAQEHSVHAVSDQEVTSPQKVLLVLCPNVQLCEQVVRMANSLCRDDGETIVSVAAICGRQGWPIREPDVIVTTPAALLNYVDLDRTRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSQSKKSVAEFPMKQESSLPSEDAFEGEEELQIEAISEEDDNDKEDIVDISNEAETVKQRDWRRVRKSYERSKQYVFVAATLPVNGKKTAGGILKYMFPDAEWVCGNYLHCHNPRLEQKWIEVTVDTQVDELIKAVNHRFRSEDLDNAGGIHRTMNCTLEERAQTLVDFHDKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRRAGELGQPVETAFSRKRSFRNKLKKRGTNKARDSATIKESALA 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01211 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 502 IPR027417 -
Pumo1g01211 552 CDD SF2_C_DEAD 418 497 - -
Pumo1g01211 552 Pfam Helicase conserved C-terminal domain 428 488 IPR001650 -
Pumo1g01211 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 505 IPR027417 -
Pumo1g01211 552 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 371 IPR014001 -
Pumo1g01211 552 Gene3D - 49 368 IPR027417 -
Pumo1g01211 552 SMART ultradead3 99 390 IPR014001 -
Pumo1g01211 552 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 81 524 - -
Pumo1g01211 552 Pfam DEAD/DEAH box helicase 106 273 IPR011545 GO:0003676|GO:0005524
Pumo1g01211 552 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Pumo1g01211 552 Gene3D - 395 552 IPR027417 -
Pumo1g01211 552 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 536 IPR001650 -
Pumo1g01211 552 MobiDBLite consensus disorder prediction 532 552 - -
Pumo1g01211 552 CDD DEADc 91 272 - -
Pumo1g01211 552 SMART helicmild6 405 488 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01211 Pumo-Chr1 20507542 20521542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01211 446 505 Eukaryotic Initiation Factors Gene Family AT3G13920 36.667 1.00e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01211 - - gmx:100789323 942.569