Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01206 ATGGACTCTAACAGTGTCGTTTCTTGGCCGAGGATGCCGGAAAACATGGACGGTTTCGGTCTCTCACAGAAACAATCCGAAGAGGTTCATGTTTTAGCCGTTGATGACAGCCTCGTTGATCGCAAAGTCATCGAACACTTGCTCAAAGTCTTAGCTTGTAAAGTTACTGCTGTGGATAGTGGGCTGAGAGCACTGCAATTGCTTGGACTATTGGACGAGCAGAAAATGCCCTCTGAAACTGATGGTTTTGTGGGTTTAAAGGTGGATCTAATTATCACAGACTACTGTATGCCCGGAATGACCGGTTATGAGTTGCTCAAGAAAATTAAGGAATCATCCACTTTCAAGGAAACTCCTGTGGTGATTATGTCCTCTGAAAACGTTTTGCCACGCATAGACAGATGTTTGGAGGAAGGTGCAGAGGATTTCATAGTGAAGCCAGTGAAGTTATCTGATGTGAAGCGTTTGAAGGATTACATGACAACAAAGGAGGTTAGGGGTGAAAGCCAAGAAGACAGGGAAGAAGGGATCAACAAGAGGAAGCTATTAGACACCTCTGATGTGTCATCATCATCACCACCGTCCATTTCCTCATCCACTCTTCCATCTTCACCCTCAGTGATTGACTCTCCAATCAGACGGCTTAAAATGACCAGCACTTATTGA 666 0.4474 MDSNSVVSWPRMPENMDGFGLSQKQSEEVHVLAVDDSLVDRKVIEHLLKVLACKVTAVDSGLRALQLLGLLDEQKMPSETDGFVGLKVDLIITDYCMPGMTGYELLKKIKESSTFKETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEVRGESQEDREEGINKRKLLDTSDVSSSSPPSISSSTLPSSPSVIDSPIRRLKMTSTY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01206 221 CDD REC_typeA_ARR 31 156 - -
Pumo1g01206 221 MobiDBLite consensus disorder prediction 183 221 - -
Pumo1g01206 221 Gene3D - 29 195 - -
Pumo1g01206 221 SUPERFAMILY CheY-like 29 156 IPR011006 -
Pumo1g01206 221 SMART REC_2 29 160 IPR001789 GO:0000160
Pumo1g01206 221 MobiDBLite consensus disorder prediction 163 182 - -
Pumo1g01206 221 ProSiteProfiles Response regulatory domain profile. 30 161 IPR001789 GO:0000160
Pumo1g01206 221 Pfam Response regulator receiver domain 31 153 IPR001789 GO:0000160
Pumo1g01206 221 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 189 IPR045279 GO:0009736
Pumo1g01206 221 MobiDBLite consensus disorder prediction 163 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01206 Pumo-Chr1 20443877 20445238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01206 16 213 Response Regulator Gene Family AT1G59940 56.951 1.78e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo1g01206 Response_reg 1.9e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01206 K14492 - gmx:100527828 363.999