Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01204 ATGTCTTCTAATGCCACCAATGCTAAGAAATCTTATTACAAGGACCGTGTGGACGACACTGTGTATGGCCTCTTCATGTGCCGCGGTGACCTTCCCTCTCGCCTCTGTCAACAGTGCGTCCTAAACGCAACCCAACGAATATACTCAGAGTGTAATTCGTTCCAAGAGGCTATAATTTGGTACAGCCACTGCATGCTTCGCTATTCCAATAGCTATTTTTTCTCTGGGGTACAAAAAAGTCCAACATTTCAAATGTTGAATGTTACCACTACCTCCACGCCCATCGCAGGCCAAGACTACTTCACTTTTACATTATCAACTACGTTCGCTAGTCTGGCGGAGGCCACAGGGGATGCTCCTGAGAAATATGTGAACAAATCATTAAAATTGAATGATTTGCAGACCCTTTATACTCTTGGTCAATGTACGCAGGATTTGTCTAGTGATGATTGTAAGGGCTGTCTCGCAGATATAAACGGAAAAATTCCATGGTCAAGCTTGGGAAGCGTAGGGGGAAGAGTTCTATATCCAAGCTGCAATCTCAGGTTTGAAGTGTTCCCATTTTACAGGGGTGGTGACGATGCTCAAAGACCAAGGGCGACTAATCATTCTTCTCCACCAGCCCCAAAAGTTAAAGATAAAAGAAAAGGCCAATCACAAACAATGATCTTGATTATTGTACTCTCGATTATTTCATTGGCACTCTTCTCTTCTGGCTACTATTTGATAAAGAAAAAAACAAGAAAGAGTGTTAACACTATTCTTAGAGAAAAATTTGGTCATGAAAGTGTAGCTTTAGAGCCATTGCAATTCAAGTTGGCCGTAATTGAAGCAGCAACCAACAACTTTTCAGATGAGAATAGGATTGGTAGAGGTGGATTTGGAACAGTTTACAAGGGCATTCTTCTTGATGGACGACAAATAGCGGTAAAGAGACTCTCAAAAAGCTCTGGGCAAGGTGAAAATGAGTTTAGGAATGAAGTTTTATCGATAGCCAAGCTTCAACATAGAAATCTTGTGGGATTCATTGGCTTTTGTCTTGAAGAACAAGACCAAGTACTTATTTACGAATATGTGCCGAACAAGAGCCTTGACTATTTTTTATTTGGTTTGACACTTGCCACCCTTACATACCTCTTAATTAGTTTATGTTTCGATTCATGCGCATTAGATTTATCTGTGTTTGTTTCAATAAATTTTAGTTAA 1206 0.4022 MSSNATNAKKSYYKDRVDDTVYGLFMCRGDLPSRLCQQCVLNATQRIYSECNSFQEAIIWYSHCMLRYSNSYFFSGVQKSPTFQMLNVTTTSTPIAGQDYFTFTLSTTFASLAEATGDAPEKYVNKSLKLNDLQTLYTLGQCTQDLSSDDCKGCLADINGKIPWSSLGSVGGRVLYPSCNLRFEVFPFYRGGDDAQRPRATNHSSPPAPKVKDKRKGQSQTMILIIVLSIISLALFSSGYYLIKKKTRKSVNTILREKFGHESVALEPLQFKLAVIEAATNNFSDENRIGRGGFGTVYKGILLDGRQIAVKRLSKSSGQGENEFRNEVLSIAKLQHRNLVGFIGFCLEEQDQVLIYEYVPNKSLDYFLFGLTLATLTYLLISLCFDSCALDLSVFVSINFS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01204 401 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 244 358 - -
Pumo1g01204 401 Pfam Salt stress response/antifungal 99 184 IPR002902 -
Pumo1g01204 401 Pfam Salt stress response/antifungal 12 70 IPR002902 -
Pumo1g01204 401 Gene3D Phosphorylase Kinase; domain 1 243 358 - -
Pumo1g01204 401 MobiDBLite consensus disorder prediction 194 216 - -
Pumo1g01204 401 Pfam Protein kinase domain 284 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01204 401 ProSiteProfiles Protein kinase domain profile. 283 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01204 401 ProSitePatterns Protein kinases ATP-binding region signature. 289 311 IPR017441 GO:0005524
Pumo1g01204 401 ProSiteProfiles Gnk2-homologous domain profile. 83 188 IPR002902 -
Pumo1g01204 401 Gene3D - 82 188 IPR038408 -
Pumo1g01204 401 Gene3D - 1 73 IPR038408 -
Pumo1g01204 401 SUPERFAMILY Protein kinase-like (PK-like) 261 374 IPR011009 -
Pumo1g01204 401 FunFam Cysteine-rich receptor-like protein kinase 25 81 188 - -
Pumo1g01204 401 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 370 - -
Pumo1g01204 401 ProSiteProfiles Gnk2-homologous domain profile. 1 73 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01204 Pumo-Chr1 20407622 20411305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01204 21 369 Receptor kinase-like Gene Family AT4G05200 38.483 4.97e-79 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo1g01204 Pkinase 2.9e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01204 - - gmx:100782505 512.686