Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01203 ATGCTTCAACCATGGCCTTTTATGAGCCTTGTTTTTGTTTTACTTTTGCACAGTTTGTCAATTCCATCTTGTCATTGCCAAACCAGCAATTCTCCTTCTCAGAACATTGAAACTTTCTATCCAAATGGAACATCAGCAACACAACAACCTGAGCCACCACCACAGCCACAACAGCCTGGTAACATAGCACCTAGCCGCGGTTCATCTAACCGGTGCTTGAGGAAGAGAAGGAGAAGGAGAGAGGAGATAAGTAACACTGCTGCTGGTGGAGATAACCGTGTTGTGCCTCAGGGAAATGTGTTTGAGAGAATTGATGGGAATGTGAGGGGGTTGATTGTTGATGAGGATGGTTTGGATGTGATTTATTGGAGAAAGCTTGAAGGGAAGAACTCTAACAAGGATCTACATAAGGAGGTTGTGAGTAGTCCTAGAAACAAAGAAAAAGAAGATGAAGGAGATGGTCATGATGAAAATCAAGTGAAAAAATCCAAGGCCATCCAAGAGGTTCCTCTTCTTAGAGGCAAATCTTCAACTTCTCACTTGAATGTATCTCCAGAAGAGGATGAGCCATATAGATTTTCACCACTTCCTTCTCCTCCTTCTTCTGCTTCTGTTTCTGCTCCTACTCCTTCTAGTCTTCCTGCATCAGCTGGGGTTGTTATCAAGGGTGTTCAGAAACCAGATTCTCCAACTCAACCATCAACTCCACCCCCTCCAGTTTCACCATCAACACCATCATCCTCTACTTTTTCAGCAGTTCCGAAAACAAATAATCCCGCGCCATCGCCTCCTCCTCCCCCAATCCCGGCTAGAAGGAGTCCAGCACCACCTCCTCCTCCACCAGCATCATCAAAACCACCACCTGCTCCCATCGAAATGCCTGCTATTAAGCAAAGAAACTCTTCAGGAAAAGGCATGCCAGAAACCAGCAATGATCAAGTGAAGCTGAAGCCTTTGCATTGGGATAAGGTGAATACTAATAATGCTGATCACTCCATGGTTTGGGACAAAGTTGATCGCGGCTCTTTCAGGGTTGATGGAGATCTTATGGAAGCTCTCTTTGGTTATGTCGCGACCAATCGAAGATCTCCCAAAGGAAAGAGTCACTCAGCCATTCCTAGCAAGGATGCCTCAGCTCAATCAGCAAAATCTTTCCTTCTTGACCCCAGGAAATCACAGAACATTGCTATTGTTTTGAAATCTCTTGCAGTCTCACAAAGCCAAATTCTTGATGCACTAACTGATGGTAAAGGCCTCAATGCAGATACCCTTGAAAAGCTGGCTAGAGTTTCCCCAACAGAAGAGGAGCAATCTCTTATCCTTGAATACAAAGGAGACCCATGCTCGACTTGCAGCAGCTGA 1362 0.4508 MLQPWPFMSLVFVLLLHSLSIPSCHCQTSNSPSQNIETFYPNGTSATQQPEPPPQPQQPGNIAPSRGSSNRCLRKRRRRREEISNTAAGGDNRVVPQGNVFERIDGNVRGLIVDEDGLDVIYWRKLEGKNSNKDLHKEVVSSPRNKEKEDEGDGHDENQVKKSKAIQEVPLLRGKSSTSHLNVSPEEDEPYRFSPLPSPPSSASVSAPTPSSLPASAGVVIKGVQKPDSPTQPSTPPPPVSPSTPSSSTFSAVPKTNNPAPSPPPPPIPARRSPAPPPPPPASSKPPPAPIEMPAIKQRNSSGKGMPETSNDQVKLKPLHWDKVNTNNADHSMVWDKVDRGSFRVDGDLMEALFGYVATNRRSPKGKSHSAIPSKDASAQSAKSFLLDPRKSQNIAIVLKSLAVSQSQILDALTDGKGLNADTLEKLARVSPTEEEQSLILEYKGDPCSTCSS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01203 453 PANTHER FORMIN-RELATED 11 447 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Pumo1g01203 453 MobiDBLite consensus disorder prediction 230 244 - -
Pumo1g01203 453 MobiDBLite consensus disorder prediction 134 320 - -
Pumo1g01203 453 ProSiteProfiles Formin homology-2 (FH2) domain profile. 306 453 IPR015425 -
Pumo1g01203 453 SUPERFAMILY Formin homology 2 domain (FH2 domain) 319 447 - -
Pumo1g01203 453 MobiDBLite consensus disorder prediction 360 385 - -
Pumo1g01203 453 Pfam Formin Homology 2 Domain 309 447 IPR015425 -
Pumo1g01203 453 Gene3D Formin, FH2 domain 306 453 IPR042201 -
Pumo1g01203 453 MobiDBLite consensus disorder prediction 363 385 - -
Pumo1g01203 453 MobiDBLite consensus disorder prediction 257 293 - -
Pumo1g01203 453 MobiDBLite consensus disorder prediction 134 163 - -
Pumo1g01203 453 MobiDBLite consensus disorder prediction 35 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01203 Pumo-Chr1 20378285 20379826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01203 1 446 FH2 protein (formin) Gene Family AT1G24150 38.115 1.23e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01203 - - gmx:100783219 592.423