Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01196 ATGACGAGTGGTGGTGGTCAGAGACTAACCACCAAAGATGCCTTGGCATTTCTCAAGGCAGTAAAGGACGTGTTTCAAGATAAGAGGGAAACGTATGATGACTTTATGGAAGTAATGAAGGATTTCAGAGTTCAAAGAATTGATACAATAGGTGTCATGGCAAGAGTGAAGGAGCTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGAAATTATACTTCCATTGGAGGATGAGCAACCTCCCCAAAAGAAGCCGGTTGAATTTGCAGAAGAAGCCATAAATTTCTTGGGCAAGGTTATGTCTCGTTTTCAAGGCAATGACCGTGTTTATAAGTCATTTCAAGACATATTAAATATGTACAGAAATGAAACCAAGTCTATCACTGAGGTTTACCAGGAGGTTACTGCACTTTTCCAGGGCCATGCAGATCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATACATCAGGAACAGCCTCTACTCGACATGCTTCTACTCAAAATTCTCTCCTTCATGATAGGAGCTCTGCAATGCCAACAATTATGCAAATGCATGGAGAAAGGACCATAGCTTCACATGGTGATCGTGACCTCAGTGCTGACCATCCTGATCCAGAACTTGACAGGTGTTTGATGAAGGCTGATAAGGATCAGAGGAGGCGTGGTGCAAAGGACAAGGACTGTAGAGAAGAGAGAGACAGGAGACAATGGGAAAGGGATGATAGAGATTATGATCGTGATGGTAGTAGGGAGCGTTTATCTCACAAGTGGAAATCTGGTTGTATGTGTAATCCGGTGTTTGGTTACCTTGAAAAAGTCAAGGAGAAATTACAAAATCCTGAAGATTTCCTGGAATTTTTGAAGTACCTAAATATCTACAGCAAGGAAATAATTACCAGACAAGAATTGCAATCATCGGTGGGCAATTTACTGGGAAAATATGCTGATCTTATAGAGGGATTTGATGAATTTTTGGCTCAATGTGAGAAGAATGGACATGGACCTAAACCAATGAAGGTAGAGGACAGGGATCAGGATCGGGATAGGGATGATGAGATGAAAAAAAGGGATCGCAAATGCCTAGAAAGGGACAAGTCCAATGCAACTGCTAACAAGGATGTTTCAGTTCCTAAGATGTCTCTGTATGCCAGCAAGGATAAGTATGCAATGAAACCTATAAGTGAGCTGGACCTTTCTAACTGTGAACAATGCACTCCTAGTTACCGTCTTCTACCAAAAAATTACCCAATACCGCCAGCTAGCCACAGAACAGAACTTGGTGCAGAGGTATTGAATGATCACTGGGTTTCTGTTACTTCTGGCAGTGAGGACTATTCCTTTAAGCACAGGTGCAAAAACCAATATGAGGAGAGCATGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGCAAATGCTACAACTAAACGAGTTGAAGATCTCTTAGACAAGATTAATGCTAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATCTTAGGTGCATTGAACGATTATATGGTGATCATGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATCTTTGGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTATCACAAATCACTTGATCACCGTAGTTTCTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGTCTTAGTGGCAGAAATCAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCTATTATTCCTCACTTGGAATTCATGTATCCTGATCCGGAGATTCATGAAGATCTGTATCAACTCATAAAATATTCCTGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTGGAGTTCCTTCTCGACCCCAAGGTCCAGAGGATACAGAAGATGTTGTCAAGGCTAATAAGAATAATTCTGCCAAAAGTGGCACTGCAATTGATGATGGTGATAGTAGTCCTGTAACGAATCCTAAGAATTTAAACACTAATAGAAATGGGGATGAGAACTTTCCATTAGAACAATCACATTCCTGCAAACAATGGCAAACAAGTGGGGATAATAAGGTTAAAGAGGATAATTTTGATTCAGAACGCTCGGCACATCAGACTGAAACCTTGGGAAGTAGTACACAGCAGGATAAAATGCATATAAATGCATCCATGCCTGATGAAGTATCAAGAACCAATAAGCAAGATCATTCCATTGAACGGTTGGTGAATGCTAATGCCTCACTGTCCTCGGGTATGGAGCAAATTAGTAAAAGAACAAATGTGGATAATGCATCAGGACTTACTGCTACTCCATCAAGACCTGGTAATATTTCTGGTGAGGGAGGACTTGGTTTACCTTCATTAGAGGTTGCTGATTCTACAAGACCAGTTACATCTACTAATGGGGCCATCATTGAGGACACCAAAGTTCACAGATATCACGAAGAATCAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCCCCTAATGGAGACTTTGAAGAGGATAACTTTGCAGTTTATGGACATGCTGGTTTGGAGGCAGTTCATAAAGGAAAAGATGGTACTATTTGTCGACAATACCAAAATAGACATGGGGAAGAAGTTCGTGGTGAAGGAGGAGAAAATGATGCTGATGATGAAGCAGAAGAAAGTCCCCATAGATCATTGGAGGAAAGTGAAAATGCTTCTGAAAATGGTGAAGTTTCTGGTACTGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAACTTGAGGAGGATGGAGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCAGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGATGGTGCCTCATTGCCATATTCAGAGCGCTTTCTTGTCACTGTAAAGCCTCTGGCAAAACATGTTCCTCCAGTGTTGCATGACAAAGAAAGGACTGTTAGAGTCTTTTATGGAAATGATTCTTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATCCAATCTGCAAAGGTTAACTCGTCATCTGCTGAAAAGAAGTGGAGGGCTTCAAATGATACAGGCTCTACTGATCAATATGGCAGGTTTATGGACGCCCTTTACAATTTACTGGATGGTTCTTCTGATAGTACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCACTGATGAGATGGATAACAAGCTGCTTCAACTATATGCATATGAAAAATCAAGAGAACCTGGAAGATTCGTTGATTTAGTTTATCACGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCACCTGCACCTACCCAATTGTCTATTCAACTGATGGACTATGGCTATGATAAGCCTGAAGTTAATGCTGTGTCAATGGACCCTAATTTTTCAGCCTATCTGCACAATGACTTCCTATCTGTTGTCCCTGACAAAAAGGAGAAGTCAGGAATTTACCTGAAGAGGAATAAGCGCAAGTATGCCAGTAGTGATGAATTTTCAAGCCAGACCATGGATGGACTAAAAATTATCAATGGTCTAGAGTGCAAGATAGCTTGCAATTCATCTAAGATACTGAAGACTTTTTATATCGAACAAGAATAA 3882 0.4016 MTSGGGQRLTTKDALAFLKAVKDVFQDKRETYDDFMEVMKDFRVQRIDTIGVMARVKELFKGHKDLILGFNTFLPKGYEIILPLEDEQPPQKKPVEFAEEAINFLGKVMSRFQGNDRVYKSFQDILNMYRNETKSITEVYQEVTALFQGHADLLEEFTHFLPDTSGTASTRHASTQNSLLHDRSSAMPTIMQMHGERTIASHGDRDLSADHPDPELDRCLMKADKDQRRRGAKDKDCREERDRRQWERDDRDYDRDGSRERLSHKWKSGCMCNPVFGYLEKVKEKLQNPEDFLEFLKYLNIYSKEIITRQELQSSVGNLLGKYADLIEGFDEFLAQCEKNGHGPKPMKVEDRDQDRDRDDEMKKRDRKCLERDKSNATANKDVSVPKMSLYASKDKYAMKPISELDLSNCEQCTPSYRLLPKNYPIPPASHRTELGAEVLNDHWVSVTSGSEDYSFKHRCKNQYEESMFRCEDDRFELDMLLESANATTKRVEDLLDKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLVAEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFMYPDPEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPMLGVPSRPQGPEDTEDVVKANKNNSAKSGTAIDDGDSSPVTNPKNLNTNRNGDENFPLEQSHSCKQWQTSGDNKVKEDNFDSERSAHQTETLGSSTQQDKMHINASMPDEVSRTNKQDHSIERLVNANASLSSGMEQISKRTNVDNASGLTATPSRPGNISGEGGLGLPSLEVADSTRPVTSTNGAIIEDTKVHRYHEESVGHFKSEREEGELSPNGDFEEDNFAVYGHAGLEAVHKGKDGTICRQYQNRHGEEVRGEGGENDADDEAEESPHRSLEESENASENGEVSGTESADGEECSRELEEDGDHEHDNKAESEGEAEGMADANDVEGDGASLPYSERFLVTVKPLAKHVPPVLHDKERTVRVFYGNDSFYVLFRLHQTLYERIQSAKVNSSSAEKKWRASNDTGSTDQYGRFMDALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYAYEKSREPGRFVDLVYHENARVLLHDENIYRIECSPAPTQLSIQLMDYGYDKPEVNAVSMDPNFSAYLHNDFLSVVPDKKEKSGIYLKRNKRKYASSDEFSSQTMDGLKIINGLECKIACNSSKILKTFYIEQE 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01196 1293 FunFam Paired amphipathic helix SIN3-like protein 92 164 - -
Pumo1g01196 1293 FunFam Paired amphipathic helix protein SIN3 267 339 - -
Pumo1g01196 1293 Coils Coil 482 502 - -
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 751 765 - -
Pumo1g01196 1293 Pfam C-terminal domain of Sin3a protein 1048 1284 IPR031693 -
Pumo1g01196 1293 SMART hdac_interact2seq4b 409 509 IPR013194 -
Pumo1g01196 1293 SUPERFAMILY PAH2 domain 271 337 IPR036600 GO:0006355
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 824 845 - -
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 766 781 - -
Pumo1g01196 1293 PANTHER SIN3B-RELATED 8 1192 IPR039774 GO:0003714
Pumo1g01196 1293 SUPERFAMILY PAH2 domain 7 76 IPR036600 GO:0006355
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 702 781 - -
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 984 1001 - -
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 338 376 - -
Pumo1g01196 1293 SUPERFAMILY PAH2 domain 99 163 IPR036600 GO:0006355
Pumo1g01196 1293 ProSiteProfiles PAH domain profile. 93 164 IPR003822 GO:0006355
Pumo1g01196 1293 Pfam Paired amphipathic helix repeat 294 334 IPR003822 GO:0006355
Pumo1g01196 1293 Pfam Paired amphipathic helix repeat 118 161 IPR003822 GO:0006355
Pumo1g01196 1293 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 222 258 - -
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 343 376 - -
Pumo1g01196 1293 FunFam Paired amphipathic helix protein Sin3 13 75 - -
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 881 900 - -
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 165 184 - -
Pumo1g01196 1293 Gene3D Paired amphipathic helix 271 339 IPR036600 GO:0006355
Pumo1g01196 1293 ProSiteProfiles PAH domain profile. 258 337 IPR003822 GO:0006355
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 702 750 - -
Pumo1g01196 1293 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Pumo1g01196 1293 Pfam Sin3 family co-repressor 411 502 IPR013194 -
Pumo1g01196 1293 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 931 1014 - -
Pumo1g01196 1293 Gene3D Paired amphipathic helix 91 165 IPR036600 GO:0006355
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 947 961 - -
Pumo1g01196 1293 MobiDBLite consensus disorder prediction 824 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01196 Pumo-Chr1 20330395 20355516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01196 4 128 WRKY Transcription Factor Family AT4G12020 45.669 8.28e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo1g01196 Sin3a_C 6.1e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01196 K11644 - gmx:100781798 2151.33