Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01195 ATGATGAGTGAAGGTGGTAAGGCACAACTTACTGCAAATGATGCCATAGCATATATACAGACAGTGAAGGATGTATTTCAAGATAAGAGGGAGAAGTATGATTACTTTTTGAAACTCATGAAGGACTACAAAGAGCAAAGAATTTATACTGAGGATGTCGTAGCAATTGTGAAGGAGCTGTTTAAAGAGCATACTGATTTAATTTTGGGATTTAACACCTTCTTGCAAGATGAATATAAAATCAAACTTCCATTGGAGGACAAAACCCCCCCCTCAGAGCATGCGTGGTGGACTTGA 297 0.3838 MMSEGGKAQLTANDAIAYIQTVKDVFQDKREKYDYFLKLMKDYKEQRIYTEDVVAIVKELFKEHTDLILGFNTFLQDEYKIKLPLEDKTPPSEHAWWT 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01195 98 Pfam Paired amphipathic helix repeat 31 75 IPR003822 GO:0006355
Pumo1g01195 98 Gene3D Paired amphipathic helix 14 75 IPR036600 GO:0006355
Pumo1g01195 98 PANTHER SIN3B-RELATED 10 88 IPR039774 GO:0003714
Pumo1g01195 98 ProSiteProfiles PAH domain profile. 8 78 IPR003822 GO:0006355
Pumo1g01195 98 FunFam Paired amphipathic helix protein Sin3 14 75 - -
Pumo1g01195 98 SUPERFAMILY PAH2 domain 8 77 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01195 Pumo-Chr1 20322653 20323102 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01195 5 90 WRKY Transcription Factor Family AT4G12020 47.674 6.04e-21 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo1g01195 PAH 6.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01195 K11644 - gmx:100813398 125.176