Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01194 ATGGCAGATAGTGCCTTAGCATATCTCAACACAGTCAAGGATGCATTTAAAGATGAGAGGGAAAAATATGATAAATTTTTGGAACTCATGAAAAATTTCACTGCTGAAAGATTCAACCTTGTTAGAGGCATAGAAGAAGTGAAGGAGCTGTTTAAAGGGCATACAGATCTAATTTTGGGATTTAACGTCTTCTTGCCAAAGGGATATGAAATCAAACTTCCATGGCAGGATGAACAACCTCCACAAAAGAAGCCTGATGCATTTGTTGAAGCTAGAAAACTTCTGTGCAAGATTAAGACTCGATTTCAAGGCCGTGATCATCTTTACAAGACATTTCTAGCCATATTGAAGATGCACAAAGATGGAAAAAAGACATCCACTGCAGCTTACGAGGAGATTACTGCACTTCTTCAGGAGCATGAGGATCTTCTTAGCGAGTTACCTTGTTTATCTCTTAATACTTCAAGAACAACCTCAATTCATTTTACTTCTGCTCAAAATTCTCTGTTTCATGAAATAATGCAACAAATGTGTGTTCCCAAGGGAAAAAGGACCAAAACTGCACATGATGATCACAACCACATTGTTGATCATAGATTAGAGAGAGATTGGAGTCAATGGGAAAAGGATAATAGAGATTATTATCAAGATGGTAGTGAAGAGTTTGCTTTCTGTGTAAAAGTCAAGGATAAAGTACAAAATCCTAAGAATTACTTTTCAAAGCATGTGGGTATCTACAGCAAGGAAAAAATTACTCAACAAGAATTGCAGTTATCGACTACTGGTTTCCTAGGAGAATACCCAGATCTCATGAAGGGATATGTTGAATGTGTAACCCAATGTGAGAAAATGAATGAGGAATTCTGTGTTGGCATCGTGAAGAAAAAATCCTTGAGGGATGAAAAACATGTGCAGAAACGATTAAAGGTTGAAGACTGGGACAGAGATCGACATCATGATAGTGATGATCGGGTGAAAGAAACAATTGGTGAATGCCGAGAAAGGGACAAATCTACTGCAGTTTCCAACAAGAATGTTTCTGATCCCAAGTTGTCTCTATATGCCGACAAGAAGAAGTATTCTGCAAAATCTGTTGAAGAGCTGGATCTATCTATCTGTGAACAGTGCACTCCCAGTTACTATCTTCTACCAAAAGAATTCCAAGTACCATCTTCTAGCCGGAGAACAAAACTTGATGCAGAAGTATTGAATGACCAATGGAAATGTGTTGGTTCAAGCATTAAGGATTATTCTTCTAATCACATTAGCAAAAATCCATACGAAATGACCTTGTTTAAATGTGAAGATGACAGGATTGAACTTGACATGTGGTTAGAGACTGCAAAATCAACAACTAAGCAAGTTGAAGAGCTCATAGAAAAGATCAATACTAACATAATTGAAAGAGACAATCCAATTGATATTGAGAAGCACTTAAAAGCTCGAAATCTTAGGTGCATCGAGCAATTATATGGCGACAATTGGATTGAAGTGCTGGATGCGTTAAGGCAGAATGCATCTCGAGTTTTGCAAGTCATTTTAACCAGGTTGAAGCAGAAACAGGAAGAGTGGGCAAGATGCCGTGCTGATTTGAATAAACTTTGGGCTGAAGTATATGCTGAGAACCATCATAAATCACTTGATCATCGTGTAGCTTCTACTAGGAACCAAAAGCTTTAG 1680 0.378 MADSALAYLNTVKDAFKDEREKYDKFLELMKNFTAERFNLVRGIEEVKELFKGHTDLILGFNVFLPKGYEIKLPWQDEQPPQKKPDAFVEARKLLCKIKTRFQGRDHLYKTFLAILKMHKDGKKTSTAAYEEITALLQEHEDLLSELPCLSLNTSRTTSIHFTSAQNSLFHEIMQQMCVPKGKRTKTAHDDHNHIVDHRLERDWSQWEKDNRDYYQDGSEEFAFCVKVKDKVQNPKNYFSKHVGIYSKEKITQQELQLSTTGFLGEYPDLMKGYVECVTQCEKMNEEFCVGIVKKKSLRDEKHVQKRLKVEDWDRDRHHDSDDRVKETIGECRERDKSTAVSNKNVSDPKLSLYADKKKYSAKSVEELDLSICEQCTPSYYLLPKEFQVPSSSRRTKLDAEVLNDQWKCVGSSIKDYSSNHISKNPYEMTLFKCEDDRIELDMWLETAKSTTKQVEELIEKINTNIIERDNPIDIEKHLKARNLRCIEQLYGDNWIEVLDALRQNASRVLQVILTRLKQKQEEWARCRADLNKLWAEVYAENHHKSLDHRVASTRNQKL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01194 559 Gene3D Paired amphipathic helix 4 66 IPR036600 GO:0006355
Pumo1g01194 559 ProSiteProfiles PAH domain profile. 84 154 IPR003822 GO:0006355
Pumo1g01194 559 SUPERFAMILY PAH2 domain 81 147 IPR036600 GO:0006355
Pumo1g01194 559 FunFam Paired amphipathic helix protein Sin3 4 66 - -
Pumo1g01194 559 ProSiteProfiles PAH domain profile. 1 68 IPR003822 GO:0006355
Pumo1g01194 559 PANTHER SIN3B-RELATED 3 555 IPR039774 GO:0003714
Pumo1g01194 559 Coils Coil 445 465 - -
Pumo1g01194 559 Gene3D Paired amphipathic helix 216 282 IPR036600 GO:0006355
Pumo1g01194 559 SUPERFAMILY PAH2 domain 3 67 IPR036600 GO:0006355
Pumo1g01194 559 SMART hdac_interact2seq4b 372 472 IPR013194 -
Pumo1g01194 559 Gene3D Paired amphipathic helix 91 148 IPR036600 GO:0006355
Pumo1g01194 559 Pfam Sin3 family co-repressor 374 465 IPR013194 -
Pumo1g01194 559 Pfam Paired amphipathic helix repeat 109 146 IPR003822 GO:0006355
Pumo1g01194 559 Pfam Paired amphipathic helix repeat 21 65 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01194 Pumo-Chr1 20314060 20319899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01194 5 80 WRKY Transcription Factor Family AT4G12020 46.053 4.26e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo1g01194 Sin3_corepress 4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01194 K11644 - gmx:100782878 860.522