Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01190 ATGTGTTCATCGGAGAAGGAGGGGATCATGCTCTTCGGCGTGCGCCTCACCGTACCCGATAACAACCCCACCTCCTTCAGGAAGAGCGCCAGCATGAACAATCTTTCTCAGTACGAGCCTCCGCTGCCGCAAGATCCCAACGCAGGATACGTCTCAGACGACGTCGTTCACCCCTCGCGTCGCACGCGTGAACGCAAGCGAGGGGTTCCGTGGACGGAAGAAGAGCATAGGTTGTTCCTGTTAGGATTACAGAACGTCGGAAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTGAAAACCAGAACTCCAACACAGGTTGCAAGTCATGCTCAGAAGTACTTCCTCCGCCGCCACACGCAGAGCCGCCGCCGCCGGAGATCTAGTCTCTTCGACATCACCACCGACTCGGTGATGGAACAGTGGCCGGCGAAGGAAGAAGAACAAGCGGTGCCGTCAACTAGGTCGAAACCGGTTCTGCCGGTTCCTCCGTCTTCGAAGATGGCTGAGTTGGACTTGAATGGGAAGTCACTGTCGCTGAAGCTTCCGGTATCCAAGCCACCTATGTCTAATGAGAATTTTGGCAGTGGCGGGGATAGCATATTTATCAGTGTTGCTTGA 621 0.5427 MCSSEKEGIMLFGVRLTVPDNNPTSFRKSASMNNLSQYEPPLPQDPNAGYVSDDVVHPSRRTRERKRGVPWTEEEHRLFLLGLQNVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHTQSRRRRRSSLFDITTDSVMEQWPAKEEEQAVPSTRSKPVLPVPPSSKMAELDLNGKSLSLKLPVSKPPMSNENFGSGGDSIFISVA 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01190 206 ProSiteProfiles SANT domain profile. 66 119 IPR017884 -
Pumo1g01190 206 MobiDBLite consensus disorder prediction 34 68 - -
Pumo1g01190 206 MobiDBLite consensus disorder prediction 143 170 - -
Pumo1g01190 206 ProSiteProfiles Myb-like domain profile. 63 115 IPR001005 -
Pumo1g01190 206 NCBIfam myb-like DNA-binding domain, SHAQKYF class 66 117 IPR006447 GO:0003677
Pumo1g01190 206 PANTHER TRANSCRIPTION FACTOR KUA1 5 151 - -
Pumo1g01190 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 119 IPR017930 -
Pumo1g01190 206 FunFam transcription factor MYB1R1 69 120 - -
Pumo1g01190 206 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Pumo1g01190 206 Gene3D - 69 120 - -
Pumo1g01190 206 CDD SANT 70 115 IPR001005 -
Pumo1g01190 206 SUPERFAMILY Homeodomain-like 65 118 IPR009057 -
Pumo1g01190 206 SMART sant 67 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01190 Pumo-Chr1 20187505 20188820 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo1g01190 Myb_DNA-binding 1.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01190 - - gmx:778091 348.206