Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01186 ATGTCATATCGGTCGCCGGAAAGTGACATCATAGCTCCGACTCCGGGAGCGTTCAGGCTCCGGTGGGACGTGTTTCTGAGCTTCAGGGGAACCGACACGCGCGGCGCCATCACGAAGGGCCTCTACGAGTCTCTGCAGGCGCGTGGGGTTCGCGTGTTTCTGGACGACGTCGGATTGGAGCGTGGGGAAGACATAGCACGGGGGCTGATGGAGGGCATTGATGACTCAGCAGCGTTCATTGTGATTATATCTCAAAACTACGCTACTTCCCATTGGTGTTTGGAGGAACTCACCAAGATTTGCGAGACCCGGAGGCTGGTCTTGCCCGTTTTCTACCGGGTCGACCCGTCCCATGTCCGACACCAAACGGGTCCCTTCAAAGATAGTTTCGCATCGCATCAACAAAGGTTTGGGGAAAATAAGGTTTCCAAGTGGAGGGAAGCTTTGAAGAAAGTTGGTGGAGTTGCTGGTTGGGTTTTGAATGACAGTGAGGAAGATAATCTGATTCGGCGTTTGGTGCAAAGGGTAATGAAGGAGTTGAGTAATACTCCTATAGGTGTGCCTGAATTTGCAGTAGGGCTTGATGAACGTGTTGAGAAGGTGATGAAGGTGTTGCAAGTTCAATCCAATGGTGTCAAGGTTCTGGGGTTGTATGGGATGGGTGGGGTTGGTAAGACAACCCTGGCCAAGGCACTTTTCAATGCCCTTGTTAATCGTTTTGAGCATCGTTGCTTCATTTCCAATGTCAGAGAAGTTTCATCAAAAGATGATGGTTTGGTTTCCCTTCAAAGCAAAATCATTAAAGACCTTTTCTCTAGAGCGGGGTCTCCTACAATCAGTGATGTCAATGTTGGTATTTCTGCTATCAAAGCACGAGTTAGTGAGAATCGAGTTTTACTAGTCTTGGATGATGTTGATGATGTAAATCAGCTTGATGCTTTGATAGGTAAGAGGGAATGGTTTTATGATGGAAGCCGTGTGATAATCACTACAAGAGATACACAAGTTCTACCTGAGAGTCATGTGAATGAGTTGTATGAAGTTAGGGAATTGTACTTACATGAAGCACTAGAGTTGTTCAGTTACCATGCATTTCGAAGAAATAAACCGCCAGAAAATTTTCTTAACATATCAGAGAAGATTGTGTCTCTGACGGGAAGAATGCCTTTGGCTTTGGAAGTGTTTGGTTCATTTTTGTTTGGTAAGAGGAGGGTGGAGGAATGGGAGGATGCTGTGGAGAAGCTGAGACAAATTCGTCCTCAGCATCTTCAGGATGTGTTGAAGATAAGTTATGATGCGTTGGATGAAGAAGAGAAGTGCATATTTCTTGATATTGCATGCTTGTTTGTCCAAATGGGAATGAGGCGTGATGATGTGATTGATGTGTTAAGAGGTTGTGGTTTTAGGGGTGAGATAGCTATCACGGTACTTGTGCAGAAATGCTTAATCAAAATCACTCAGGACAATACACTGTGGATGCATGATCAAATTAGAGACATGGGGAGGCAAATTGTTGTAGATGAAAGCCTTGTTGATCCTGGTAAGCGTAGTAGACTGTGGGATCGTGCTGAAATCATGGCTGTTTTGAAGGGTCACATGGGAACAAGAAGTATACAAGGAATTGTGCTAGATTTTGAGGAAGAAAGATTTTACAAAAGTAAGGCCAAATCAGTAGTTTCAAAGAAACTTCAATGGAGATCATGTTTAAGAAATGTATCAAGATACATCAAACAAAGCCTTAAGAATTATCTCTACCCTCAAGCAGAGGAAAACAAAGAGGTTACACTTCATACGAAATCCTTTGAACCAATGGTTAATCTGAGACAGCTTCAGATCAATAATCTGAAATTACAAGGCAAGTTTCTTCCAGCTGAACTGAAGTGGCTACAATGGCAAGAATGCCCTTTAGAACGTATGCCTTTGAAATCTTGGCCACAAGAGCTAGCTGTCCTTGATCTCAAAAACAGCAAGAAAATGGTAACCCTGTGGGGGTGGAATGGTTACCAGGTACCACAGAACTTAATGGTCTTGAACCTCTCCTACTGCATCCAACTCACTGCTATCCCTGATTTATCTGGGTGTCAACATCTAGAAAAGATTGATTTGGAGAACTGCATTAATCTAACTAAGCTTCATGAATCAGTTGGCAGCTTGAATACCTTGCGTAGTTTAAATTTGACGCGTTGTTCAAGCCTTATCAACCTTCCCATTGATGTCTCAGGGCTAAAACATCTAGAGAGCCTTTTTCTTTCTGGCTGCTCCAAGTTAGAAGCTTTACCAGAAAGCATAGGAATCCCGAAATCCTTGAAAGTACTTCATGCTGATGACACAGCTATAGCAGAGTTGCCCCAGTCCATTTTTCGCCTCAGCAAACTTGAACGCCTTATTTTAGAAGGTTGCAAAAATTTGAGAAGGCTACCTAGTTCTATAGGACATCTATGTTCTTTGCAAGAATTATCTCTATATCGATCCGGGTTAGAAGAATTACCTGACTCTGTTGGATCGTTGAATAACCTTGAGAGACTCAATTTGATGTGGTGTGAATCTCTCACTGTAATTCCTGATTCTATAGGCAATCTCATATCATTGACAGAACTTTTGTTTGATAGGAACTGCAATTAA 2622 0.4302 MSYRSPESDIIAPTPGAFRLRWDVFLSFRGTDTRGAITKGLYESLQARGVRVFLDDVGLERGEDIARGLMEGIDDSAAFIVIISQNYATSHWCLEELTKICETRRLVLPVFYRVDPSHVRHQTGPFKDSFASHQQRFGENKVSKWREALKKVGGVAGWVLNDSEEDNLIRRLVQRVMKELSNTPIGVPEFAVGLDERVEKVMKVLQVQSNGVKVLGLYGMGGVGKTTLAKALFNALVNRFEHRCFISNVREVSSKDDGLVSLQSKIIKDLFSRAGSPTISDVNVGISAIKARVSENRVLLVLDDVDDVNQLDALIGKREWFYDGSRVIITTRDTQVLPESHVNELYEVRELYLHEALELFSYHAFRRNKPPENFLNISEKIVSLTGRMPLALEVFGSFLFGKRRVEEWEDAVEKLRQIRPQHLQDVLKISYDALDEEEKCIFLDIACLFVQMGMRRDDVIDVLRGCGFRGEIAITVLVQKCLIKITQDNTLWMHDQIRDMGRQIVVDESLVDPGKRSRLWDRAEIMAVLKGHMGTRSIQGIVLDFEEERFYKSKAKSVVSKKLQWRSCLRNVSRYIKQSLKNYLYPQAEENKEVTLHTKSFEPMVNLRQLQINNLKLQGKFLPAELKWLQWQECPLERMPLKSWPQELAVLDLKNSKKMVTLWGWNGYQVPQNLMVLNLSYCIQLTAIPDLSGCQHLEKIDLENCINLTKLHESVGSLNTLRSLNLTRCSSLINLPIDVSGLKHLESLFLSGCSKLEALPESIGIPKSLKVLHADDTAIAELPQSIFRLSKLERLILEGCKNLRRLPSSIGHLCSLQELSLYRSGLEELPDSVGSLNNLERLNLMWCESLTVIPDSIGNLISLTELLFDRNCN 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01186 873 Gene3D - 178 345 IPR027417 -
Pumo1g01186 873 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 158 IPR035897 -
Pumo1g01186 873 SUPERFAMILY L domain-like 492 871 - -
Pumo1g01186 873 Gene3D - 19 177 IPR035897 -
Pumo1g01186 873 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 762 IPR044974 GO:0006952
Pumo1g01186 873 Pfam TIR domain 22 183 IPR000157 GO:0007165
Pumo1g01186 873 Gene3D Ribonuclease Inhibitor 562 762 IPR032675 -
Pumo1g01186 873 Gene3D Ribonuclease Inhibitor 763 873 IPR032675 -
Pumo1g01186 873 Pfam NB-ARC domain 196 430 IPR002182 GO:0043531
Pumo1g01186 873 Gene3D - 351 435 IPR042197 -
Pumo1g01186 873 ProSiteProfiles TIR domain profile. 20 180 IPR000157 GO:0007165
Pumo1g01186 873 PRINTS Disease resistance protein signature 385 399 - -
Pumo1g01186 873 PRINTS Disease resistance protein signature 214 229 - -
Pumo1g01186 873 PRINTS Disease resistance protein signature 716 732 - -
Pumo1g01186 873 PRINTS Disease resistance protein signature 292 306 - -
Pumo1g01186 873 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 182 - -
Pumo1g01186 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 445 IPR027417 -
Pumo1g01186 873 SMART till_3 21 155 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01186 Pumo-Chr1 20136429 20140896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01186 79 868 WRKY Transcription Factor Family AT4G12020 30.958 2.76e-89 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01186 - - gmx:100786934 1418.68