Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01181 ATGGATCCGGGTGCGATGATGAACGAGGGTTCCTTTGCGAATAATGCGAGCGGCAATACGGCGCCGTTTAGCTTGGCGGAGATCTGGCAGTTCCCGCAGGCGATTAGTGGCGGCGGGGGATTGGGACTCAGAAGCCCGCAGTTCGGTCACGGGCCGGGGCAGTTTGGGGATTTTACCACCGGGCCCAACCATGGGCTTGGGCCCAGTAACAGCAGCAGAAAGAGGCGAGATTCCGAGGACGATTCCGCTAAGGGCGTGTCCACCAGCAATGCCGTGAATGAGGGTGATGGAAAACGTGTTAAAGGGAATAGGAACGAGGGTGGTGGTGATGGTAATAATAAAGGTGAAGGAGAAGTCAGTTCAGGAAAGCCTGCGGAGCAAAGCGCTAAGCCAGCTTCGGAGCCTCCGAAGCAAGATTACATTCACGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAACGAGCTCGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTACCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAGCGTCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCAAGACTTAACTCTGGTATTGAAGCGTTTCCTCCTAAAGATTTTGGTCAGCAAGCATTTGATCCTGCTGGCATACCATTTGGTTCACAAGCTCCAAGAGAGTATAGCAGAGGTTCTTCACCAGATTGGTTACATATGCAGGTAGGTGGTTTTGAAAGAACAACGTAG 810 0.4926 MDPGAMMNEGSFANNASGNTAPFSLAEIWQFPQAISGGGGLGLRSPQFGHGPGQFGDFTTGPNHGLGPSNSSRKRRDSEDDSAKGVSTSNAVNEGDGKRVKGNRNEGGGDGNNKGEGEVSSGKPAEQSAKPASEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPPKDFGQQAFDPAGIPFGSQAPREYSRGSSPDWLHMQVGGFERTT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01181 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983
Pumo1g01181 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 216 IPR036638 GO:0046983
Pumo1g01181 269 Coils Coil 196 216 - -
Pumo1g01181 269 MobiDBLite consensus disorder prediction 35 140 - -
Pumo1g01181 269 FunFam Basic helix-loop-helix transcription factor 146 218 - -
Pumo1g01181 269 Gene3D - 146 222 IPR036638 GO:0046983
Pumo1g01181 269 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 70 240 IPR024097 GO:0006355
Pumo1g01181 269 SMART finulus 155 205 IPR011598 GO:0046983
Pumo1g01181 269 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Pumo1g01181 269 CDD bHLH_AtBPE_like 139 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01181 Pumo-Chr1 20087613 20090297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01181 1 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 55.839 6.29e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo1g01181 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01181 - - gmx:100784478 490.73